Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DBP13_RS29930 Genome accession   NZ_CP028834
Coordinates   6497088..6497714 (-) Length   208 a.a.
NCBI ID   WP_128803360.1    Uniprot ID   -
Organism   Streptomyces sp. M2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6492088..6502714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBP13_RS29905 - 6492367..6493017 (+) 651 WP_108013494.1 acetate uptake transporter family protein -
  DBP13_RS29910 acs 6493014..6495005 (+) 1992 WP_108013495.1 acetate--CoA ligase -
  DBP13_RS29915 - 6495040..6495480 (-) 441 WP_234547614.1 GNAT family N-acetyltransferase -
  DBP13_RS29920 - 6495523..6496122 (-) 600 WP_128803358.1 gamma carbonic anhydrase family protein -
  DBP13_RS29925 - 6496319..6497080 (+) 762 WP_128803359.1 nucleotidyltransferase domain-containing protein -
  DBP13_RS29930 vraR 6497088..6497714 (-) 627 WP_128803360.1 response regulator transcription factor Regulator
  DBP13_RS29935 - 6497762..6497950 (-) 189 Protein_5885 response regulator transcription factor -
  DBP13_RS29940 - 6497998..6498186 (-) 189 Protein_5886 response regulator transcription factor -
  DBP13_RS29945 - 6498183..6499385 (-) 1203 WP_128803361.1 sensor histidine kinase -
  DBP13_RS29950 - 6499566..6500339 (+) 774 WP_108013501.1 class I SAM-dependent methyltransferase -
  DBP13_RS29955 - 6500424..6501776 (+) 1353 WP_128803362.1 amidohydrolase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22088.39 Da        Isoelectric Point: 6.2625

>NTDB_id=248512 DBP13_RS29930 WP_128803360.1 6497088..6497714(-) (vraR) [Streptomyces sp. M2]
MTPPIRLLLCDDHAVVRAGLRALLSSADDIEVVGEAGSGEEALAMAGRLRPDVVLMDLQLGEGTDGVTATRRLTAEGGTR
VLVLTMFDTDADITRAIEAGATGYLLKAERPDELFAAIHSAASGRTALSAPVADRLLAQMRSPRPALSDREQEILTQLAR
GLGNREIARALFISEATVKTHLGRIYGKLGVETRAGAVAVAKERRLLP

Nucleotide


Download         Length: 627 bp        

>NTDB_id=248512 DBP13_RS29930 WP_128803360.1 6497088..6497714(-) (vraR) [Streptomyces sp. M2]
ATGACCCCACCCATACGCCTCCTCCTCTGCGACGACCACGCCGTCGTACGAGCCGGCCTGCGCGCCCTGCTGTCCAGCGC
CGACGACATCGAGGTGGTCGGCGAGGCCGGCAGCGGGGAGGAGGCGCTCGCCATGGCGGGGCGCCTGCGCCCGGATGTCG
TCCTGATGGATCTGCAGCTCGGCGAGGGCACGGACGGGGTGACGGCGACGCGGCGGCTGACCGCTGAAGGAGGTACGCGC
GTCCTGGTGTTGACGATGTTCGACACCGACGCCGACATAACCCGGGCCATCGAGGCGGGCGCCACGGGATACCTGCTGAA
GGCGGAGCGTCCGGACGAACTCTTCGCCGCGATCCACAGCGCCGCGTCAGGCCGTACGGCGCTGTCGGCCCCGGTGGCCG
ACCGTCTCCTCGCCCAGATGCGCAGCCCCCGCCCGGCCCTGTCCGACCGCGAACAGGAGATCCTCACCCAGCTCGCCCGC
GGCCTCGGCAACCGCGAGATCGCCCGGGCCCTGTTCATCAGCGAGGCGACGGTGAAGACCCATCTCGGCCGGATCTACGG
CAAGTTGGGAGTGGAGACCCGGGCCGGTGCGGTGGCAGTGGCGAAGGAGCGTCGGCTGCTGCCTTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-201)

Response regulator receiver domain (Response_reg)

(8-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.614

99.519

0.394