Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CPQ89_RS09535 Genome accession   NZ_CP023566
Coordinates   1946251..1948059 (-) Length   602 a.a.
NCBI ID   WP_112195451.1    Uniprot ID   A0AAD0KYY0
Organism   Ligilactobacillus murinus strain CR141     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1941251..1953059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPQ89_RS09510 (CPQ89_09490) mgtE 1941630..1942997 (-) 1368 WP_004048221.1 magnesium transporter -
  CPQ89_RS09515 (CPQ89_09495) - 1943013..1943909 (-) 897 WP_112195445.1 RluA family pseudouridine synthase -
  CPQ89_RS09520 (CPQ89_09500) - 1943887..1944705 (-) 819 WP_004048223.1 NAD kinase -
  CPQ89_RS09525 (CPQ89_09505) - 1944742..1945371 (-) 630 WP_112195447.1 GTP pyrophosphokinase -
  CPQ89_RS09530 (CPQ89_09510) - 1945576..1946205 (+) 630 WP_112195449.1 DsbA family protein -
  CPQ89_RS09535 (CPQ89_09515) pepF 1946251..1948059 (-) 1809 WP_112195451.1 oligoendopeptidase F Regulator
  CPQ89_RS09540 (CPQ89_09520) - 1948098..1949072 (-) 975 WP_112195453.1 competence protein CoiA -
  CPQ89_RS09545 (CPQ89_09525) - 1949164..1949913 (-) 750 WP_004048228.1 adaptor protein MecA -
  CPQ89_RS09550 (CPQ89_09530) spxA 1950048..1950446 (-) 399 WP_004048229.1 transcriptional regulator SpxA -
  CPQ89_RS09555 (CPQ89_09535) nrdG 1950803..1951480 (-) 678 WP_112195455.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68472.21 Da        Isoelectric Point: 4.8034

>NTDB_id=248511 CPQ89_RS09535 WP_112195451.1 1946251..1948059(-) (pepF) [Ligilactobacillus murinus strain CR141]
MSEVTRLPKRSEVPLELTWDLTKIFATDAEFEEAFGQVVKAAEDFEQYKGTLENGAQAFLVALMAMLKLDRQLEVVYVYA
SMKNDEDTANAKYQALMARVQKLLADVSAKLAWFQPELLALAPEKLASYYQAESRLNAYKTLVNDWTRLRAHVLSEKEEA
LLAGASDILGASANVFEVLNNADLKFPVVTDGSGSKVELSNGVYGKLLEATERSVRREAFEQLYTVYKQFRHTFAATLSA
HVRKHNFSAKLRNYQSAKEASLAQNNIPVAVYDTLVKTVNENLELLHDYVALRKDILRVDELHMYDMYTPLTGEPTLTFT
YEQAKKMTLEALSVLGEEYTTYVEKAFAERWIDVVANAGKRSGAYSGGAYDTAPYILLNWQDTLDNLFTLVHEMGHTMHS
YYTRTNQPYQYGDYSIFVAEIASTTNENLLTQYLLETQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEAWIHEQDASQV
PLTADLMSDFYSKLNQRYYGDAVENDPEIAYEWSRIPHFYYNFYVYQYATGFGAASTLAERVLDEEPAHTEAYLNYLKAG
SSAAPLEVMKKAGVDMTDSQYLEKAFGIFKERLAELKELLAK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=248511 CPQ89_RS09535 WP_112195451.1 1946251..1948059(-) (pepF) [Ligilactobacillus murinus strain CR141]
ATGAGTGAAGTAACACGTCTACCAAAAAGATCAGAGGTGCCACTCGAGCTTACTTGGGATCTGACTAAGATCTTTGCGAC
TGATGCAGAATTTGAAGAAGCATTTGGGCAAGTTGTTAAAGCAGCTGAAGATTTTGAACAATACAAAGGAACATTAGAAA
ATGGGGCCCAAGCCTTTTTAGTTGCTCTAATGGCAATGCTTAAGTTGGATCGTCAACTTGAAGTAGTCTATGTCTATGCA
AGCATGAAAAATGATGAGGATACTGCTAATGCTAAGTACCAAGCTTTAATGGCACGGGTCCAAAAGTTATTGGCTGATGT
TTCAGCCAAATTAGCTTGGTTTCAGCCTGAATTATTAGCTTTAGCACCAGAAAAATTAGCAAGCTATTATCAAGCTGAGT
CTAGATTGAATGCCTATAAAACATTAGTCAATGATTGGACTCGACTTCGCGCCCATGTCTTGAGTGAAAAAGAAGAAGCG
CTATTAGCAGGTGCAAGCGACATCTTAGGCGCTTCGGCTAATGTTTTTGAAGTTTTAAACAATGCTGATCTAAAATTTCC
CGTAGTAACTGATGGATCGGGTTCAAAAGTCGAGCTTTCAAATGGAGTCTACGGTAAATTGCTCGAAGCGACCGAGCGCT
CAGTTAGACGTGAGGCATTCGAACAGTTATACACTGTGTATAAGCAGTTCAGACATACGTTTGCGGCTACTCTGTCTGCG
CATGTACGTAAGCATAATTTTTCAGCTAAATTACGTAATTATCAAAGTGCCAAGGAAGCTTCATTAGCCCAAAATAATAT
TCCAGTAGCTGTTTATGATACTTTAGTTAAAACAGTCAATGAAAATTTGGAGCTACTGCATGATTATGTAGCTTTACGTA
AGGATATCTTAAGGGTCGATGAGTTGCATATGTATGATATGTATACTCCCTTGACGGGTGAACCGACATTGACGTTTACT
TATGAGCAGGCTAAAAAGATGACCTTAGAGGCTTTGAGCGTCTTAGGCGAAGAATATACTACCTATGTAGAGAAGGCTTT
TGCTGAACGGTGGATCGATGTTGTTGCTAATGCAGGTAAGCGTTCGGGGGCCTATTCGGGTGGGGCCTATGATACTGCAC
CATATATTTTATTGAATTGGCAAGATACGCTAGATAATCTCTTTACATTAGTCCATGAGATGGGACACACGATGCACAGC
TACTATACACGGACTAATCAACCTTATCAATATGGGGATTATTCGATCTTTGTTGCTGAGATCGCATCAACGACAAACGA
AAACTTGTTGACCCAGTATTTGCTAGAGACCCAGACTGATCCTAAGGTACGGGCTTACGTATTGAATCACTATTTAGATG
GCTTTAAGGGAACCGTTTATCGGCAAACACAATTTGCTGAATTTGAAGCTTGGATCCATGAGCAAGATGCGTCACAAGTG
CCATTAACAGCAGATCTGATGTCAGACTTTTACAGTAAATTAAATCAACGCTACTATGGTGATGCAGTTGAAAATGACCC
AGAGATCGCATATGAATGGTCACGGATCCCGCATTTCTACTATAATTTCTATGTCTATCAATATGCAACTGGTTTTGGTG
CGGCCTCTACTTTAGCAGAGCGCGTCTTAGATGAAGAGCCTGCGCACACTGAAGCTTATTTGAACTACTTAAAAGCAGGT
AGTTCAGCGGCTCCATTGGAAGTAATGAAAAAAGCTGGTGTCGATATGACTGATAGTCAATATTTAGAGAAAGCTTTTGG
GATCTTTAAGGAACGTTTGGCTGAATTAAAAGAGCTATTAGCTAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.288

98.505

0.525

Multiple sequence alignment