Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DBP13_RS26170 Genome accession   NZ_CP028834
Coordinates   5677339..5678001 (+) Length   220 a.a.
NCBI ID   WP_108007623.1    Uniprot ID   -
Organism   Streptomyces sp. M2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5672339..5683001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBP13_RS26155 - 5672481..5673179 (+) 699 WP_108007621.1 TerB family tellurite resistance protein -
  DBP13_RS26160 - 5674023..5676104 (+) 2082 WP_128802983.1 MMPL family transporter -
  DBP13_RS26165 - 5676164..5677342 (+) 1179 WP_128804527.1 histidine kinase -
  DBP13_RS26170 vraR 5677339..5678001 (+) 663 WP_108007623.1 response regulator transcription factor Regulator
  DBP13_RS26175 - 5678004..5679188 (+) 1185 WP_128802984.1 sialidase family protein -
  DBP13_RS26180 - 5679207..5680133 (-) 927 WP_108007624.1 dihydrodipicolinate synthase family protein -
  DBP13_RS26185 - 5680130..5681149 (-) 1020 WP_128802985.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23307.86 Da        Isoelectric Point: 4.7304

>NTDB_id=248507 DBP13_RS26170 WP_108007623.1 5677339..5678001(+) (vraR) [Streptomyces sp. M2]
MTIRVLLADDQTLVRAAFAMLVESARDMEVVGQAGSGREAVALARGARPDLVVMDIRMPDLDGIEATRLIAADEDLAGVR
ILVLTTYDTDEHIVEALRAGASGFLVKDTRPAELLDAIRTVAAGEALLSPGPTGRLIERFLRSPSAPATGGPECLSDRER
EVLTLLARGLNNTEIGEALGLSPLTAKTHVSRIMGKVGARDRAQLVILAYESGLVTPGTM

Nucleotide


Download         Length: 663 bp        

>NTDB_id=248507 DBP13_RS26170 WP_108007623.1 5677339..5678001(+) (vraR) [Streptomyces sp. M2]
ATGACGATCCGCGTGCTGCTCGCCGACGACCAGACCCTGGTGCGGGCCGCGTTCGCCATGCTCGTCGAGTCGGCGCGGGA
CATGGAGGTCGTGGGGCAGGCGGGCTCCGGCCGGGAGGCCGTGGCGCTGGCCCGCGGCGCGCGCCCCGACCTGGTGGTGA
TGGACATCCGCATGCCCGACCTGGACGGCATCGAGGCGACCCGGCTGATCGCCGCCGACGAGGATCTCGCGGGCGTCCGC
ATCCTGGTCCTGACCACCTACGACACCGACGAGCACATCGTGGAGGCGCTGCGCGCGGGCGCCTCCGGGTTCCTGGTCAA
GGACACCCGCCCGGCCGAACTCCTCGACGCCATCCGCACGGTGGCCGCCGGGGAGGCGCTGCTGTCGCCGGGGCCCACGG
GACGGCTGATCGAGCGGTTCCTGCGCAGCCCGTCGGCGCCCGCGACCGGCGGCCCGGAATGCCTGTCCGACCGTGAGCGC
GAGGTGCTGACCCTGCTGGCGCGCGGGCTCAACAACACCGAGATCGGCGAGGCGTTGGGGCTCAGCCCGCTGACCGCGAA
GACCCATGTCAGCCGGATCATGGGCAAGGTCGGCGCACGGGACCGGGCCCAGCTCGTCATCCTCGCCTACGAGTCGGGAC
TGGTGACTCCGGGAACGATGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-119)

Bacterial regulatory proteins, luxR family (GerE)

(154-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.209

97.727

0.364