Detailed information
Bioinformatically predicted
Overview
| Name | recN | Type | Machinery gene |
| Locus tag | CPS94_RS03975 | Genome accession | NZ_CP023565 |
| Coordinates | 799098..800777 (-) | Length | 559 a.a. |
| NCBI ID | WP_112194926.1 | Uniprot ID | A0AAD0KYV4 |
| Organism | Ligilactobacillus murinus strain CR147 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 789664..830392 | 799098..800777 | within | 0 |
Gene organization within MGE regions
Location: 789664..830392
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPS94_RS03915 (CPS94_03910) | xerD | 789664..790554 (-) | 891 | WP_112194934.1 | site-specific tyrosine recombinase XerD | - |
| CPS94_RS03920 (CPS94_03915) | - | 790538..791020 (-) | 483 | WP_004047625.1 | Fur family transcriptional regulator | - |
| CPS94_RS03925 (CPS94_03920) | - | 791036..791899 (-) | 864 | WP_112194932.1 | S1 RNA-binding domain-containing protein | - |
| CPS94_RS03930 (CPS94_03925) | tsf | 792576..793451 (-) | 876 | WP_010688964.1 | translation elongation factor Ts | - |
| CPS94_RS03935 (CPS94_03930) | rpsB | 793601..794398 (-) | 798 | WP_004047620.1 | 30S ribosomal protein S2 | - |
| CPS94_RS03940 (CPS94_03935) | - | 794574..795569 (-) | 996 | WP_162626459.1 | D-2-hydroxyacid dehydrogenase | - |
| CPS94_RS03945 (CPS94_03940) | - | 795711..795998 (-) | 288 | WP_004047616.1 | GIY-YIG nuclease family protein | - |
| CPS94_RS03950 (CPS94_03945) | - | 795982..796740 (-) | 759 | WP_004047615.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| CPS94_RS03955 (CPS94_03950) | - | 796946..797572 (+) | 627 | WP_056958638.1 | 1-acyl-sn-glycerol-3-phosphate acyltransferase | - |
| CPS94_RS03960 (CPS94_03955) | - | 797621..797845 (-) | 225 | WP_004047611.1 | YneF family protein | - |
| CPS94_RS03965 (CPS94_03960) | - | 797926..798222 (-) | 297 | WP_112194928.1 | DUF896 domain-containing protein | - |
| CPS94_RS03970 (CPS94_03965) | lexA | 798388..799011 (+) | 624 | WP_004047608.1 | transcriptional repressor LexA | - |
| CPS94_RS03975 (CPS94_03970) | recN | 799098..800777 (-) | 1680 | WP_112194926.1 | DNA repair protein RecN | Machinery gene |
| CPS94_RS03980 (CPS94_03975) | - | 800836..801294 (-) | 459 | WP_112194924.1 | arginine repressor | - |
| CPS94_RS03985 (CPS94_03980) | - | 801315..802142 (-) | 828 | WP_112194922.1 | TlyA family RNA methyltransferase | - |
| CPS94_RS03990 (CPS94_03985) | - | 802157..803035 (-) | 879 | WP_112194920.1 | polyprenyl synthetase family protein | - |
| CPS94_RS03995 (CPS94_03990) | - | 803140..803367 (-) | 228 | WP_004047599.1 | exodeoxyribonuclease VII small subunit | - |
| CPS94_RS04000 (CPS94_03995) | xseA | 803364..804707 (-) | 1344 | WP_112194917.1 | exodeoxyribonuclease VII large subunit | - |
| CPS94_RS04005 (CPS94_04000) | folD | 804707..805555 (-) | 849 | WP_112194915.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD | - |
| CPS94_RS04010 (CPS94_04005) | nusB | 805666..806064 (-) | 399 | WP_004047594.1 | transcription antitermination factor NusB | - |
| CPS94_RS04015 (CPS94_04010) | - | 806064..806492 (-) | 429 | WP_004047591.1 | Asp23/Gls24 family envelope stress response protein | - |
| CPS94_RS04020 (CPS94_04015) | efp | 806753..807310 (-) | 558 | WP_004047589.1 | elongation factor P | - |
| CPS94_RS04025 (CPS94_04020) | - | 807440..808507 (-) | 1068 | WP_112194913.1 | Xaa-Pro peptidase family protein | - |
| CPS94_RS04030 (CPS94_04025) | - | 808570..808797 (-) | 228 | WP_112194911.1 | hypothetical protein | - |
| CPS94_RS04035 (CPS94_04030) | - | 808975..809739 (+) | 765 | WP_112194909.1 | RNA methyltransferase | - |
| CPS94_RS04040 (CPS94_04035) | - | 809890..810501 (-) | 612 | WP_112194907.1 | HAD-IA family hydrolase | - |
| CPS94_RS04045 (CPS94_04040) | dtd | 810514..810960 (-) | 447 | WP_112194905.1 | D-aminoacyl-tRNA deacylase | - |
| CPS94_RS04050 (CPS94_04045) | - | 810976..813198 (-) | 2223 | WP_112194903.1 | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | - |
| CPS94_RS04055 (CPS94_04050) | - | 813320..813646 (-) | 327 | WP_112194901.1 | hypothetical protein | - |
| CPS94_RS04060 (CPS94_04055) | - | 813728..814477 (-) | 750 | WP_112286374.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| CPS94_RS04065 (CPS94_04060) | prmA | 814481..815368 (-) | 888 | WP_004047570.1 | 50S ribosomal protein L11 methyltransferase | - |
| CPS94_RS04070 (CPS94_04065) | - | 815387..815875 (-) | 489 | WP_004047568.1 | DUF3013 family protein | - |
| CPS94_RS04075 (CPS94_04070) | - | 816099..817058 (+) | 960 | WP_089135447.1 | nucleoside hydrolase | - |
| CPS94_RS04080 (CPS94_04075) | - | 817077..817427 (+) | 351 | WP_056959630.1 | hypothetical protein | - |
| CPS94_RS04085 (CPS94_04080) | - | 817634..818569 (-) | 936 | WP_112193146.1 | IS3 family transposase | - |
| CPS94_RS04090 (CPS94_04085) | - | 818494..819021 (-) | 528 | WP_004047940.1 | helix-turn-helix domain-containing protein | - |
| CPS94_RS04095 (CPS94_04090) | greA | 819098..819571 (-) | 474 | WP_004047561.1 | transcription elongation factor GreA | - |
| CPS94_RS04100 (CPS94_04095) | udk | 819620..820267 (-) | 648 | WP_112194896.1 | uridine kinase | - |
| CPS94_RS04105 (CPS94_04100) | mltG | 820292..821389 (-) | 1098 | WP_112194894.1 | endolytic transglycosylase MltG | - |
| CPS94_RS04110 (CPS94_04105) | - | 821729..822664 (-) | 936 | WP_112194690.1 | IS3 family transposase | - |
| CPS94_RS04115 (CPS94_04110) | - | 822589..823116 (-) | 528 | WP_112194688.1 | helix-turn-helix domain-containing protein | - |
| CPS94_RS04120 (CPS94_04115) | pheT | 823193..825604 (-) | 2412 | WP_112194892.1 | phenylalanine--tRNA ligase subunit beta | - |
| CPS94_RS04125 (CPS94_04120) | pheS | 825612..826658 (-) | 1047 | WP_112194890.1 | phenylalanine--tRNA ligase subunit alpha | - |
| CPS94_RS04130 (CPS94_04125) | - | 826977..827312 (-) | 336 | WP_004047555.1 | helix-turn-helix domain-containing protein | - |
| CPS94_RS04135 (CPS94_04130) | - | 827411..827920 (-) | 510 | WP_112194888.1 | HD domain-containing protein | - |
| CPS94_RS04140 (CPS94_04135) | - | 828130..828435 (+) | 306 | WP_112194886.1 | hypothetical protein | - |
| CPS94_RS04145 (CPS94_04140) | - | 829005..829532 (+) | 528 | WP_004047940.1 | helix-turn-helix domain-containing protein | - |
| CPS94_RS04150 (CPS94_04145) | - | 829517..830392 (+) | 876 | WP_331250498.1 | IS3 family transposase | - |
Sequence
Protein
Download Length: 559 a.a. Molecular weight: 63103.38 Da Isoelectric Point: 4.5892
>NTDB_id=248468 CPS94_RS03975 WP_112194926.1 799098..800777(-) (recN) [Ligilactobacillus murinus strain CR147]
MLQELMIRDFAIIDQLTVDFGTNMTVLTGETGAGKSIIIDALGLLAGGRGSSDFIRKGANKSLLQGQFTIPKATRTYELL
DEFGIECEDDILILQRDIYRSGKNVCRINGVLVNLGTLRQVGQTLIDIHGQNEHQELMDPERHLALVDNYQPEILAKLAQ
YQILYANYRRLSQALEQREKNAHEWAQRLDMLQFQVNEISEAQLHEGEEEELQEQKRQLDNYQTIHHALEMSYQALNGEE
LDVMSVLGNVMSELEDVAEFNSELATIYEKVSDAFYNLQDVAHEVSGQLSDLEWDEELLNSIEARLETIHQLKRKYGDSI
ETILAYYDKIKRELETMQQSDENLEQQVEQVKEAHSKAKKLALEISELRKQTAKRLEAEIHQQLSALYMDKAVFEVRFLP
ANGQLTETGLDRVEFYIQTNPGEEMGALARIASGGELSRIMLALKTIFAQNKGVTSIIFDEVDTGVSGRVAQAIAEKISQ
IATNSQVLCITHLPQVAAVADHHYFIAKHVANGRTETSLTILNDKERIEELARMLSGSSITTLTLEHAEELLKMAKEGK
MLQELMIRDFAIIDQLTVDFGTNMTVLTGETGAGKSIIIDALGLLAGGRGSSDFIRKGANKSLLQGQFTIPKATRTYELL
DEFGIECEDDILILQRDIYRSGKNVCRINGVLVNLGTLRQVGQTLIDIHGQNEHQELMDPERHLALVDNYQPEILAKLAQ
YQILYANYRRLSQALEQREKNAHEWAQRLDMLQFQVNEISEAQLHEGEEEELQEQKRQLDNYQTIHHALEMSYQALNGEE
LDVMSVLGNVMSELEDVAEFNSELATIYEKVSDAFYNLQDVAHEVSGQLSDLEWDEELLNSIEARLETIHQLKRKYGDSI
ETILAYYDKIKRELETMQQSDENLEQQVEQVKEAHSKAKKLALEISELRKQTAKRLEAEIHQQLSALYMDKAVFEVRFLP
ANGQLTETGLDRVEFYIQTNPGEEMGALARIASGGELSRIMLALKTIFAQNKGVTSIIFDEVDTGVSGRVAQAIAEKISQ
IATNSQVLCITHLPQVAAVADHHYFIAKHVANGRTETSLTILNDKERIEELARMLSGSSITTLTLEHAEELLKMAKEGK
Nucleotide
Download Length: 1680 bp
>NTDB_id=248468 CPS94_RS03975 WP_112194926.1 799098..800777(-) (recN) [Ligilactobacillus murinus strain CR147]
TTGTTACAAGAATTAATGATCCGTGATTTTGCAATTATTGATCAGTTGACCGTCGATTTTGGAACGAATATGACGGTCTT
GACTGGTGAAACTGGGGCTGGTAAGTCCATCATTATTGATGCTTTAGGTCTACTAGCAGGTGGACGCGGCTCGAGTGATT
TTATCCGCAAGGGAGCTAATAAATCATTGCTCCAAGGACAATTTACTATCCCTAAAGCAACTCGAACATATGAGCTTTTA
GATGAATTTGGGATCGAATGTGAAGATGATATTTTGATCTTACAACGCGATATTTATCGCAGTGGCAAAAATGTTTGCCG
AATAAATGGCGTTTTGGTCAATCTAGGCACACTTCGGCAGGTGGGGCAAACATTGATCGATATCCATGGGCAAAATGAGC
ATCAAGAATTGATGGATCCTGAGCGTCATTTAGCTCTAGTCGATAATTATCAGCCTGAGATCTTAGCTAAATTAGCACAA
TATCAGATACTTTATGCCAATTATCGCCGTCTTTCTCAGGCACTAGAGCAACGTGAGAAAAATGCACATGAGTGGGCGCA
AAGACTTGATATGTTACAATTTCAAGTTAATGAGATCAGTGAGGCGCAGCTGCATGAGGGTGAAGAAGAAGAGCTCCAAG
AACAAAAACGTCAATTAGATAATTATCAAACGATCCATCACGCGTTAGAGATGAGTTATCAAGCACTGAATGGTGAAGAA
TTAGATGTGATGAGTGTTCTAGGAAATGTCATGAGTGAGTTAGAAGACGTGGCTGAGTTCAATTCTGAATTAGCTACGAT
CTACGAAAAGGTCTCTGATGCTTTCTATAATCTACAAGATGTAGCGCATGAAGTTTCAGGGCAATTAAGTGATCTGGAGT
GGGATGAAGAATTGTTAAATTCCATCGAAGCACGGCTTGAAACGATCCATCAACTCAAGCGTAAATATGGTGATTCGATC
GAAACGATCTTGGCTTATTACGATAAGATAAAACGCGAACTTGAAACGATGCAACAAAGCGATGAAAACTTAGAACAGCA
AGTCGAGCAGGTCAAAGAAGCTCATAGCAAGGCAAAAAAATTAGCGTTAGAGATCAGTGAGTTGCGTAAGCAGACTGCTA
AACGGCTTGAAGCTGAGATCCATCAGCAGTTGAGTGCACTATATATGGATAAAGCTGTTTTTGAAGTGCGATTTTTACCG
GCGAATGGACAATTGACTGAAACTGGCCTTGATCGGGTCGAATTTTATATTCAAACTAATCCCGGAGAAGAAATGGGGGC
TTTAGCAAGGATCGCTTCTGGTGGTGAATTATCGCGGATCATGCTCGCGCTAAAGACGATCTTTGCTCAAAATAAAGGTG
TGACGAGTATTATTTTCGATGAGGTCGATACTGGGGTCAGTGGACGTGTCGCACAAGCGATCGCTGAAAAGATCAGCCAG
ATCGCAACTAATTCGCAGGTGCTGTGTATCACCCACTTGCCACAGGTCGCAGCTGTGGCAGACCACCATTATTTTATTGC
TAAACATGTAGCCAATGGGCGGACTGAAACTTCGCTTACGATCTTAAATGATAAAGAACGGATCGAAGAACTAGCCCGGA
TGCTGTCAGGTTCTTCGATCACGACTTTGACACTAGAACATGCAGAAGAACTGCTAAAAATGGCTAAGGAAGGTAAATAG
TTGTTACAAGAATTAATGATCCGTGATTTTGCAATTATTGATCAGTTGACCGTCGATTTTGGAACGAATATGACGGTCTT
GACTGGTGAAACTGGGGCTGGTAAGTCCATCATTATTGATGCTTTAGGTCTACTAGCAGGTGGACGCGGCTCGAGTGATT
TTATCCGCAAGGGAGCTAATAAATCATTGCTCCAAGGACAATTTACTATCCCTAAAGCAACTCGAACATATGAGCTTTTA
GATGAATTTGGGATCGAATGTGAAGATGATATTTTGATCTTACAACGCGATATTTATCGCAGTGGCAAAAATGTTTGCCG
AATAAATGGCGTTTTGGTCAATCTAGGCACACTTCGGCAGGTGGGGCAAACATTGATCGATATCCATGGGCAAAATGAGC
ATCAAGAATTGATGGATCCTGAGCGTCATTTAGCTCTAGTCGATAATTATCAGCCTGAGATCTTAGCTAAATTAGCACAA
TATCAGATACTTTATGCCAATTATCGCCGTCTTTCTCAGGCACTAGAGCAACGTGAGAAAAATGCACATGAGTGGGCGCA
AAGACTTGATATGTTACAATTTCAAGTTAATGAGATCAGTGAGGCGCAGCTGCATGAGGGTGAAGAAGAAGAGCTCCAAG
AACAAAAACGTCAATTAGATAATTATCAAACGATCCATCACGCGTTAGAGATGAGTTATCAAGCACTGAATGGTGAAGAA
TTAGATGTGATGAGTGTTCTAGGAAATGTCATGAGTGAGTTAGAAGACGTGGCTGAGTTCAATTCTGAATTAGCTACGAT
CTACGAAAAGGTCTCTGATGCTTTCTATAATCTACAAGATGTAGCGCATGAAGTTTCAGGGCAATTAAGTGATCTGGAGT
GGGATGAAGAATTGTTAAATTCCATCGAAGCACGGCTTGAAACGATCCATCAACTCAAGCGTAAATATGGTGATTCGATC
GAAACGATCTTGGCTTATTACGATAAGATAAAACGCGAACTTGAAACGATGCAACAAAGCGATGAAAACTTAGAACAGCA
AGTCGAGCAGGTCAAAGAAGCTCATAGCAAGGCAAAAAAATTAGCGTTAGAGATCAGTGAGTTGCGTAAGCAGACTGCTA
AACGGCTTGAAGCTGAGATCCATCAGCAGTTGAGTGCACTATATATGGATAAAGCTGTTTTTGAAGTGCGATTTTTACCG
GCGAATGGACAATTGACTGAAACTGGCCTTGATCGGGTCGAATTTTATATTCAAACTAATCCCGGAGAAGAAATGGGGGC
TTTAGCAAGGATCGCTTCTGGTGGTGAATTATCGCGGATCATGCTCGCGCTAAAGACGATCTTTGCTCAAAATAAAGGTG
TGACGAGTATTATTTTCGATGAGGTCGATACTGGGGTCAGTGGACGTGTCGCACAAGCGATCGCTGAAAAGATCAGCCAG
ATCGCAACTAATTCGCAGGTGCTGTGTATCACCCACTTGCCACAGGTCGCAGCTGTGGCAGACCACCATTATTTTATTGC
TAAACATGTAGCCAATGGGCGGACTGAAACTTCGCTTACGATCTTAAATGATAAAGAACGGATCGAAGAACTAGCCCGGA
TGCTGTCAGGTTCTTCGATCACGACTTTGACACTAGAACATGCAGAAGAACTGCTAAAAATGGCTAAGGAAGGTAAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recN | Bacillus subtilis subsp. subtilis str. 168 |
47.14 |
100 |
0.487 |