Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DBP13_RS01780 Genome accession   NZ_CP028834
Coordinates   348033..348740 (+) Length   235 a.a.
NCBI ID   WP_164932104.1    Uniprot ID   -
Organism   Streptomyces sp. M2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 343033..353740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBP13_RS01760 - 343985..345067 (+) 1083 WP_128800911.1 NADP-dependent oxidoreductase -
  DBP13_RS01765 - 345204..346112 (+) 909 WP_108014166.1 hypothetical protein -
  DBP13_RS01770 - 346227..346697 (+) 471 WP_108014167.1 hypothetical protein -
  DBP13_RS01775 - 346783..347997 (+) 1215 WP_234548358.1 sensor histidine kinase -
  DBP13_RS01780 vraR 348033..348740 (+) 708 WP_164932104.1 response regulator transcription factor Regulator
  DBP13_RS01785 - 348762..349889 (-) 1128 WP_128800912.1 hypothetical protein -
  DBP13_RS01790 - 350210..351469 (+) 1260 WP_234548357.1 phospholipase D-like domain-containing protein -
  DBP13_RS01795 - 351570..352541 (-) 972 WP_128800914.1 Clp protease N-terminal domain-containing protein -
  DBP13_RS01800 - 352610..352969 (+) 360 WP_108014170.1 excisionase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 24995.76 Da        Isoelectric Point: 4.4531

>NTDB_id=248446 DBP13_RS01780 WP_164932104.1 348033..348740(+) (vraR) [Streptomyces sp. M2]
MIRVLVVDDQDLIRAGLVALLQAAPGVEVVGEASDGEQAVSSAAVLRPDVILMDIRMPGMDGTTATERILAQAAAARPEP
ELPGTMAQLPRVLILTTFDLDEYVYSALRAGASGFLLKDTGPARLLGAIDAVARGDMLFAPSVTRRLIEAYVQRSEPVPD
SPALLETLTAREREVLLLTARGMSNTEIAEQLYISQATVKTHLNRTMTKLDLDSRAQAVIVAYESGLVTPGGSAS

Nucleotide


Download         Length: 708 bp        

>NTDB_id=248446 DBP13_RS01780 WP_164932104.1 348033..348740(+) (vraR) [Streptomyces sp. M2]
ATGATCCGGGTGCTCGTGGTCGACGACCAGGACCTGATCCGTGCGGGCCTCGTCGCGCTGCTGCAGGCGGCGCCCGGCGT
GGAGGTCGTCGGGGAAGCGTCCGACGGCGAGCAGGCCGTGAGCAGTGCGGCCGTTCTCCGGCCCGATGTGATCCTGATGG
ACATCCGCATGCCGGGCATGGACGGCACCACCGCGACCGAACGCATCCTCGCCCAGGCCGCCGCCGCCCGGCCTGAGCCC
GAACTGCCGGGCACAATGGCCCAGTTGCCGCGCGTGCTGATACTCACCACCTTCGACCTCGACGAGTATGTGTACTCGGC
CCTGCGCGCCGGGGCGTCCGGCTTCCTCCTCAAGGACACCGGGCCCGCACGGCTGTTGGGGGCGATCGACGCCGTGGCGC
GCGGTGACATGCTCTTCGCGCCGAGCGTCACGCGCAGGCTCATCGAGGCATACGTGCAACGCTCCGAGCCGGTCCCGGAC
TCCCCCGCGCTCCTGGAGACGCTCACCGCGCGCGAGCGCGAGGTACTGCTGCTCACGGCACGCGGCATGTCCAACACCGA
GATCGCAGAGCAGCTCTACATCAGCCAGGCCACCGTCAAGACCCACCTGAACCGCACGATGACCAAGCTCGACCTCGACA
GCCGGGCCCAGGCGGTGATCGTCGCCTACGAGTCCGGCCTCGTGACACCGGGCGGCTCCGCGAGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-129)

Bacterial regulatory proteins, luxR family (GerE)

(167-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.767

96.596

0.374