Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DBP13_RS01020 Genome accession   NZ_CP028834
Coordinates   198512..199177 (-) Length   221 a.a.
NCBI ID   WP_128800845.1    Uniprot ID   -
Organism   Streptomyces sp. M2     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 193512..204177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBP13_RS00995 - 193938..194894 (+) 957 WP_128800842.1 NADP-dependent oxidoreductase -
  DBP13_RS01000 - 194954..195364 (+) 411 WP_128800843.1 hypothetical protein -
  DBP13_RS01005 - 195544..196188 (-) 645 WP_128800844.1 dihydrofolate reductase family protein -
  DBP13_RS01010 - 196239..197030 (-) 792 WP_206660120.1 hypothetical protein -
  DBP13_RS01015 - 197107..198357 (-) 1251 WP_234548378.1 MFS transporter -
  DBP13_RS01020 vraR 198512..199177 (-) 666 WP_128800845.1 response regulator transcription factor Regulator
  DBP13_RS01025 - 199174..200451 (-) 1278 WP_164932095.1 sensor histidine kinase -
  DBP13_RS01030 - 200480..201319 (-) 840 WP_108015196.1 hypothetical protein -
  DBP13_RS01035 - 201316..202254 (-) 939 WP_108015195.1 ATP-binding cassette domain-containing protein -
  DBP13_RS01040 - 202505..202918 (-) 414 WP_108015194.1 BlaI/MecI/CopY family transcriptional regulator -
  DBP13_RS01045 - 203097..204026 (-) 930 WP_108015193.1 M48 family metalloprotease -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23903.31 Da        Isoelectric Point: 6.0274

>NTDB_id=248445 DBP13_RS01020 WP_128800845.1 198512..199177(-) (vraR) [Streptomyces sp. M2]
MTTVLVVDDQPLQRYGFRILLDSVPETDVVGEAAHGAEAVRMTAELRPDVVLMDVRMPGMDGIEATRRIVASGGRSRVLV
LTTFDLDEYVHAAIRAGASGFLLKDARPEELLAGIRAVASGDAVIAPALTRRLLDEFARYVPAHRADAAEDSGFGSLTDR
EREILVAVGKGWTNSEIATRFVLAESTVKTHVGRVLAKIGARDRIQAVIFAYDHGLARPNS

Nucleotide


Download         Length: 666 bp        

>NTDB_id=248445 DBP13_RS01020 WP_128800845.1 198512..199177(-) (vraR) [Streptomyces sp. M2]
GTGACGACCGTGCTCGTCGTGGACGACCAGCCGCTGCAGCGCTACGGCTTCCGCATCCTCCTGGACTCCGTCCCCGAGAC
CGATGTCGTCGGTGAGGCCGCCCACGGCGCCGAGGCCGTGCGCATGACCGCCGAACTACGCCCGGACGTCGTCCTGATGG
ACGTCCGCATGCCCGGCATGGACGGCATCGAGGCCACCCGTCGTATCGTCGCCTCCGGCGGCCGCTCGCGCGTCCTCGTC
CTCACCACCTTCGATCTCGACGAGTACGTCCACGCCGCCATCCGGGCCGGCGCCAGCGGCTTCCTCCTCAAGGACGCGCG
CCCCGAGGAACTCCTCGCCGGCATCCGCGCGGTCGCCTCCGGCGACGCCGTCATCGCGCCCGCCCTCACCCGCCGCCTCC
TGGACGAGTTCGCCCGCTACGTCCCCGCTCACCGCGCAGACGCCGCCGAGGACTCGGGATTCGGCTCCCTCACCGATCGC
GAACGCGAGATCCTCGTAGCCGTCGGCAAGGGCTGGACCAACAGTGAGATCGCCACTCGCTTCGTGCTGGCCGAGTCCAC
GGTCAAGACGCACGTCGGCCGCGTCCTCGCCAAGATCGGCGCTCGCGACCGCATCCAGGCCGTCATCTTCGCCTACGACC
ACGGCCTCGCCCGGCCCAACTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(156-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.209

97.285

0.362