Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   CPC18_RS09415 Genome accession   NZ_CP023561
Coordinates   1873858..1874928 (-) Length   356 a.a.
NCBI ID   WP_148121280.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TF3198     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1868858..1879928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPC18_RS09375 (CPC18_09350) gcvPA 1869035..1870381 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  CPC18_RS09380 (CPC18_09355) gcvT 1870401..1871492 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  CPC18_RS09385 (CPC18_09360) - 1871651..1872175 (-) 525 WP_001015117.1 shikimate kinase -
  CPC18_RS09390 (CPC18_09365) - 1872165..1872311 (-) 147 WP_001789879.1 hypothetical protein -
  CPC18_RS09395 (CPC18_09370) comGF 1872408..1872905 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  CPC18_RS09400 (CPC18_09375) comGE 1872823..1873122 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  CPC18_RS09405 (CPC18_09380) comGD 1873109..1873555 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  CPC18_RS09410 (CPC18_09385) comGC 1873533..1873844 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  CPC18_RS09415 (CPC18_09390) comGB 1873858..1874928 (-) 1071 WP_148121280.1 competence type IV pilus assembly protein ComGB Machinery gene
  CPC18_RS09420 (CPC18_09395) comGA 1874900..1875874 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  CPC18_RS09425 (CPC18_09400) - 1875926..1876549 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  CPC18_RS09430 (CPC18_09405) - 1876546..1876875 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  CPC18_RS09435 (CPC18_09410) - 1876875..1877861 (-) 987 WP_000161314.1 ROK family glucokinase -
  CPC18_RS09440 (CPC18_09415) - 1877858..1878061 (-) 204 WP_000087561.1 YqgQ family protein -
  CPC18_RS09445 (CPC18_09420) - 1878042..1879505 (-) 1464 WP_031879476.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41389.76 Da        Isoelectric Point: 10.0618

>NTDB_id=248426 CPC18_RS09415 WP_148121280.1 1873858..1874928(-) (comGB) [Staphylococcus aureus strain TF3198]
MKLQCINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPRFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=248426 CPC18_RS09415 WP_148121280.1 1873858..1874928(-) (comGB) [Staphylococcus aureus strain TF3198]
GTGAAACTACAATGCATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AAGGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994

Multiple sequence alignment