Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CPG34_RS02045 Genome accession   NZ_CP023545
Coordinates   415983..416951 (-) Length   322 a.a.
NCBI ID   WP_002829485.1    Uniprot ID   -
Organism   Campylobacter coli strain CFSAN032805     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410983..421951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPG34_RS02025 (CPG34_02025) - 412498..413130 (-) 633 WP_002777778.1 membrane protein -
  CPG34_RS02030 (CPG34_02030) - 413296..414285 (-) 990 WP_002792135.1 siderophore ABC transporter substrate-binding protein -
  CPG34_RS02035 (CPG34_02035) - 414300..415055 (-) 756 WP_002792134.1 ABC transporter ATP-binding protein -
  CPG34_RS02040 (CPG34_02040) - 415052..415990 (-) 939 WP_002792133.1 iron chelate uptake ABC transporter family permease subunit -
  CPG34_RS02045 (CPG34_02045) ceuB 415983..416951 (-) 969 WP_002829485.1 ABC transporter permease Machinery gene
  CPG34_RS02050 (CPG34_02050) - 417084..417977 (-) 894 WP_234888882.1 phospholipase A -
  CPG34_RS02055 (CPG34_02055) - 418076..418651 (-) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  CPG34_RS02060 (CPG34_02060) - 418714..420021 (+) 1308 WP_002793758.1 NFACT family protein -
  CPG34_RS02065 (CPG34_02065) - 420023..420361 (+) 339 WP_002777761.1 hypothetical protein -
  CPG34_RS02070 (CPG34_02070) - 420370..421095 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35463.34 Da        Isoelectric Point: 9.5069

>NTDB_id=248341 CPG34_RS02045 WP_002829485.1 415983..416951(-) (ceuB) [Campylobacter coli strain CFSAN032805]
MLFKHLFSLNILLILLVVFGMISLFIGVIRINLDDIFSLSATQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFAQALIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=248341 CPG34_RS02045 WP_002829485.1 415983..416951(-) (ceuB) [Campylobacter coli strain CFSAN032805]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATGATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCGCTACCCAGCTTGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCCCCAACTACCGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTGCAGGAGCTTC
TTTTTTTGCTCAAGCTCTCATCGCATCTATTTTTGCTCTTTTAGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGCTTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGGCTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.441

100

0.894

Multiple sequence alignment