Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   CPG33_RS05550 Genome accession   NZ_CP023543
Coordinates   1067040..1067351 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain CFSAN032806     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1062040..1072351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPG33_RS05530 (CPG33_05530) ctsE 1062909..1064468 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  CPG33_RS05535 (CPG33_05535) ctsX 1064458..1065045 (-) 588 WP_002858864.1 hypothetical protein Machinery gene
  CPG33_RS05540 (CPG33_05540) ctsP 1065049..1065657 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  CPG33_RS05545 (CPG33_05545) ctsD 1065650..1067062 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CPG33_RS05550 (CPG33_05550) ctsR 1067040..1067351 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  CPG33_RS05555 (CPG33_05555) nifJ 1067375..1070935 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  CPG33_RS05560 (CPG33_05560) - 1071027..1071668 (-) 642 WP_002858866.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=248327 CPG33_RS05550 WP_002855438.1 1067040..1067351(-) (ctsR) [Campylobacter jejuni strain CFSAN032806]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=248327 CPG33_RS05550 WP_002855438.1 1067040..1067351(-) (ctsR) [Campylobacter jejuni strain CFSAN032806]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment