Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AOY53_RS09675 Genome accession   NZ_CP028772
Coordinates   1991428..1992855 (-) Length   475 a.a.
NCBI ID   WP_000980590.1    Uniprot ID   -
Organism   Escherichia coli strain A2     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1986428..1997855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY53_RS09645 (AOY53_10280) yeeZ 1986483..1987307 (+) 825 WP_000754763.1 SDR family oxidoreductase -
  AOY53_RS09650 (AOY53_10285) yeeY 1987353..1988282 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  AOY53_RS09655 (AOY53_10290) yoeI 1988497..1988559 (+) 63 WP_010723108.1 membrane protein YoeI -
  AOY53_RS09660 (AOY53_10295) plaP 1988549..1989907 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AOY53_RS09665 (AOY53_10300) tsuA 1990086..1991144 (+) 1059 WP_000492290.1 thiosulfate utilization transporter TsuA/YeeE -
  AOY53_RS09670 (AOY53_10305) tsuB 1991158..1991385 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  AOY53_RS09675 (AOY53_10310) sbcB 1991428..1992855 (-) 1428 WP_000980590.1 exodeoxyribonuclease I Machinery gene
  AOY53_RS09680 (AOY53_10315) dacD 1993064..1994230 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AOY53_RS09685 (AOY53_10320) sbmC 1994349..1994822 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  AOY53_RS09690 (AOY53_10325) - 1995020..1995571 (+) 552 Protein_1905 FUSC family protein -
  AOY53_RS09695 (AOY53_10335) - 1995764..1996744 (+) 981 WP_000399648.1 IS110-like element IS621 family transposase -
  AOY53_RS09700 (AOY53_10340) - 1996839..1997357 (+) 519 Protein_1907 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.79 Da        Isoelectric Point: 5.4720

>NTDB_id=248314 AOY53_RS09675 WP_000980590.1 1991428..1992855(-) (sbcB) [Escherichia coli strain A2]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=248314 AOY53_RS09675 WP_000980590.1 1991428..1992855(-) (sbcB) [Escherichia coli strain A2]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCTG
CGGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTATTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTACGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment