Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AOY53_RS05810 Genome accession   NZ_CP028772
Coordinates   1200334..1200849 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain A2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195334..1205849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY53_RS05765 (AOY53_06165) csrA 1196056..1196241 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AOY53_RS05795 (AOY53_06195) yqaB 1197564..1198130 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AOY53_RS05800 (AOY53_06200) yqaA 1198127..1198555 (+) 429 WP_001287454.1 YqaA family protein -
  AOY53_RS05805 (AOY53_06205) gshA 1198628..1200184 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AOY53_RS05810 (AOY53_06210) luxS 1200334..1200849 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  AOY53_RS05815 (AOY53_06215) emrB 1200913..1202451 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AOY53_RS05820 (AOY53_06220) emrA 1202468..1203640 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AOY53_RS05825 (AOY53_06225) emrR 1203767..1204297 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AOY53_RS05830 (AOY53_06230) ygaH 1204388..1204723 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AOY53_RS05835 (AOY53_06235) ygaZ 1204713..1205450 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=248305 AOY53_RS05810 WP_001130210.1 1200334..1200849(+) (luxS) [Escherichia coli strain A2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=248305 AOY53_RS05810 WP_001130210.1 1200334..1200849(+) (luxS) [Escherichia coli strain A2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737