Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CR208_RS08600 Genome accession   NZ_CP023541
Coordinates   1803193..1803822 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1798193..1808822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR208_RS08580 (AWA97_09085) ycbZ 1798594..1800354 (-) 1761 WP_000156526.1 Lon protease family protein -
  CR208_RS08585 (AWA97_09090) matP 1800540..1800992 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CR208_RS08590 (AWA97_09095) ompA 1801068..1802108 (-) 1041 WP_000750416.1 porin OmpA -
  CR208_RS08595 (AWA97_09105) sulA 1802465..1802974 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CR208_RS08600 (AWA97_09110) sxy/tfoX 1803193..1803822 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CR208_RS08605 (AWA97_09115) yccS 1803785..1805947 (-) 2163 WP_000875020.1 YccS family putative transporter -
  CR208_RS08610 (AWA97_09120) yccF 1805957..1806403 (-) 447 WP_001261235.1 YccF domain-containing protein -
  CR208_RS08615 (AWA97_09125) helD 1806526..1808580 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=248293 CR208_RS08600 WP_000839153.1 1803193..1803822(+) (sxy/tfoX) [Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=248293 CR208_RS08600 WP_000839153.1 1803193..1803822(+) (sxy/tfoX) [Escherichia coli O104:H21 str. CFSAN002236 strain ATCC BAA-178]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment