Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CO230_RS01370 Genome accession   NZ_CP023540
Coordinates   302568..303914 (+) Length   448 a.a.
NCBI ID   WP_122026967.1    Uniprot ID   A0A3G2T9Y4
Organism   Chryseobacterium sp. 6424     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 297568..308914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO230_RS01355 (CO230_01360) - 299245..300852 (-) 1608 WP_122026964.1 CTP synthase -
  CO230_RS01360 (CO230_01365) - 301007..301834 (+) 828 WP_122026965.1 phosphatase PAP2 family protein -
  CO230_RS01365 (CO230_01370) - 301963..302478 (+) 516 WP_162989952.1 YceI family protein -
  CO230_RS01370 (CO230_01375) radA 302568..303914 (+) 1347 WP_122026967.1 DNA repair protein RadA Machinery gene
  CO230_RS01375 (CO230_01380) - 303966..304547 (+) 582 WP_122026968.1 transposase -
  CO230_RS01380 (CO230_01385) - 304605..305183 (+) 579 WP_122026969.1 ACP phosphodiesterase -
  CO230_RS01385 (CO230_01390) - 305180..305695 (-) 516 WP_122026970.1 DUF6702 family protein -
  CO230_RS01390 (CO230_01395) - 305844..306422 (+) 579 WP_122026971.1 HupE/UreJ family protein -
  CO230_RS01395 (CO230_01400) - 306506..308881 (+) 2376 WP_122028844.1 M1 family metallopeptidase -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49579.06 Da        Isoelectric Point: 6.7622

>NTDB_id=248273 CO230_RS01370 WP_122026967.1 302568..303914(+) (radA) [Chryseobacterium sp. 6424]
MAKLRTAYFCQACGTQYSQWHGQCKNCGQWNTLVEEIIDKAPEKSISGKPKQHLINIIEVETHEEPRITTPSEELNRVLG
GGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRLTELQNPNCFLFTETSVEKILHEAKKLK
PDFMIIDSIQTLQSQLIESSPGTVSQIRECSNEIITYAKSTNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHL
FRLLRANKNRFGSTSEIGIYEMVSQGLKEIKNPSQILITKKFEELSGNSIAVTLEGNRPMLLEIQALVSSAVYGTPQRSS
TGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASVLSSNEDLAISEHYCFAGEIGLSGEIRPVS
QIEQRISEAEKLGYEKIFVSNLNKIPKKNFGIKITEVSKIEDFHEQLF

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=248273 CO230_RS01370 WP_122026967.1 302568..303914(+) (radA) [Chryseobacterium sp. 6424]
ATGGCAAAACTGAGAACAGCATATTTCTGCCAAGCCTGCGGAACCCAGTATTCGCAGTGGCACGGGCAATGTAAAAACTG
TGGGCAATGGAACACCCTGGTAGAAGAAATCATTGATAAGGCTCCGGAAAAAAGTATTTCTGGTAAGCCCAAACAGCACC
TCATCAACATCATCGAAGTGGAAACCCATGAAGAACCGAGGATTACCACTCCTTCCGAGGAACTCAACCGCGTGCTTGGT
GGGGGGATTGTGCTCGGCTCTGTCACGCTGATCGGTGGTGAGCCTGGCATTGGCAAATCTACCTTGCTGCTGCAGCTCGC
GCTGAAGATGAAAAAGAAAATCCTCTACGTATCAGGGGAAGAAAGTGCTTCACAGATTAAGATGCGCGCAGACCGTTTAA
CCGAATTACAAAACCCCAACTGCTTTCTGTTTACCGAGACTTCTGTAGAAAAGATACTGCATGAAGCGAAAAAACTAAAG
CCCGATTTTATGATTATTGATTCGATACAGACGCTGCAAAGCCAACTGATCGAAAGTTCTCCCGGTACCGTATCACAGAT
CCGCGAATGTTCGAATGAAATCATCACTTACGCCAAAAGCACAAATACACCCGTGTTCTTAGTCGGGCACATCACCAAGG
ATGGGCAGATTGCCGGCCCGAAGGTACTAGAGCATATGGTGGACGTAGTGCTGAATTTTGATGGCGACCGCAACCACCTC
TTCCGCCTCTTACGCGCCAATAAAAACCGTTTCGGTTCCACCTCAGAGATTGGGATTTATGAAATGGTGTCCCAGGGACT
TAAAGAAATTAAAAACCCATCGCAAATCCTTATCACCAAGAAGTTTGAGGAGCTTTCTGGTAATTCAATAGCAGTAACGC
TGGAGGGTAACCGACCAATGCTGCTCGAAATCCAGGCGCTCGTAAGTTCGGCCGTGTATGGTACGCCGCAGAGAAGTTCT
ACCGGCTTTGATTCTAAAAGGCTAAATATGCTGCTGGCCGTACTTGAAAAAAGGGCAGGTTTCCAGTTGGGTGCCAAAGA
TGTCTTCCTGAATATTACCGGCGGTATTAAAACCGATGATCCGGCGCTGGACCTTGCGGTGGTGGCCTCGGTACTTTCAT
CAAACGAGGATCTCGCCATTTCAGAACACTATTGTTTTGCCGGAGAAATAGGGCTTAGCGGGGAAATACGGCCAGTCTCA
CAGATCGAGCAGCGAATTTCTGAAGCTGAAAAACTGGGCTACGAGAAAATTTTTGTCTCGAACCTGAACAAAATACCAAA
AAAGAACTTTGGGATAAAAATCACGGAAGTTAGCAAGATTGAGGATTTCCATGAACAGCTTTTTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-216)

Subunit ChlI of Mg-chelatase (ChlI)

(337-422)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G2T9Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.451

100

0.489
  radA Streptococcus pneumoniae Rx1

47.702

100

0.487
  radA Streptococcus pneumoniae D39

47.702

100

0.487
  radA Streptococcus pneumoniae R6

47.702

100

0.487
  radA Streptococcus pneumoniae TIGR4

47.702

100

0.487
  radA Streptococcus mitis NCTC 12261

47.702

100

0.487
  radA Streptococcus mitis SK321

47.473

100

0.482

Multiple sequence alignment