Detailed information NTG0248256

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY54_RS17700
• Genome accession: NZ_CP028771
• Coordinates: 3651604..3652596 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3646604..3657596

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY54_RS17680 (AOY54_18685)	ygbM	3647235..3648011 (+)	777	WP_001136915.1	HPr family phosphocarrier protein	-
AOY54_RS17685 (AOY54_18690)	ygbN	3648100..3649464 (+)	1365	WP_000104433.1	GntP family transporter	-
AOY54_RS17690 (AOY54_18695)	-	3649607..3650650 (-)	1044	WP_001161578.1	MBL fold metallo-hydrolase	-
AOY54_RS17695 (AOY54_18700)	-	3650875..3651426 (+)	552	WP_001179442.1	flavodoxin family protein	-
AOY54_RS17700 (AOY54_18705)	rpoS	3651604..3652596 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY54_RS17705 (AOY54_18710)	nlpD	3652659..3653753 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AOY54_RS17710 (AOY54_18715)	pcm	3653938..3654564 (-)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
AOY54_RS17715 (AOY54_18720)	surE	3654558..3655319 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY54_RS17720 (AOY54_18725)	truD	3655300..3656349 (-)	1050	WP_000568931.1	tRNA pseudouridine(13) synthase TruD	-
AOY54_RS17725 (AOY54_18730)	ispF	3656346..3656825 (-)	480	WP_001219238.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY54_RS17730 (AOY54_18735)	ispD	3656825..3657535 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=248256 AOY54_RS17700 WP_000081550.1 3651604..3652596(-) (rpoS) [Escherichia coli strain A3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=248256 AOY54_RS17700 WP_000081550.1 3651604..3652596(-) (rpoS) [Escherichia coli strain A3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGCCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGATCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715