Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CO697_RS02565 Genome accession   NZ_CP023529
Coordinates   542059..542685 (+) Length   208 a.a.
NCBI ID   WP_059178413.1    Uniprot ID   -
Organism   Lelliottia amnigena strain FDAARGOS_395     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 537059..547685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO697_RS02545 (CO697_02545) - 537456..539216 (-) 1761 WP_059178417.1 Lon protease family protein -
  CO697_RS02550 (CO697_02550) matP 539403..539855 (+) 453 WP_059178416.1 macrodomain Ter protein MatP -
  CO697_RS02555 (CO697_02555) ompA 539920..540975 (-) 1056 WP_106379801.1 porin OmpA -
  CO697_RS02560 (CO697_02560) sulA 541332..541841 (-) 510 WP_059178414.1 SOS-induced cell division inhibitor SulA -
  CO697_RS02565 (CO697_02565) sxy/tfoX 542059..542685 (+) 627 WP_059178413.1 TfoX/Sxy family DNA transformation protein Regulator
  CO697_RS02570 (CO697_02570) yccS 542642..544804 (-) 2163 WP_059178412.1 YccS family putative transporter -
  CO697_RS02575 (CO697_02575) - 544824..545270 (-) 447 WP_059178411.1 YccF domain-containing protein -
  CO697_RS02580 (CO697_02580) helD 545394..547448 (+) 2055 WP_059178410.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23976.58 Da        Isoelectric Point: 9.4138

>NTDB_id=248150 CO697_RS02565 WP_059178413.1 542059..542685(+) (sxy/tfoX) [Lelliottia amnigena strain FDAARGOS_395]
MKKISYERIYKSQEYLSSLGDIHHRALFGGYTLAVNEAVFAMVSEGELYLRACEESAQYCVKHNPTYLELVKRGRPVLLN
YYRVDDGLWQDREKLLQLSSFALKAARQERVERDNRRRLKDLPNLTFPIEVLLYEAGITSEIMLRTLGAEESWLKIRAKN
KHLGIKVLFALAGAIEGLHEAALPTARRRELNEWFNALPVRSDNHSGK

Nucleotide


Download         Length: 627 bp        

>NTDB_id=248150 CO697_RS02565 WP_059178413.1 542059..542685(+) (sxy/tfoX) [Lelliottia amnigena strain FDAARGOS_395]
ATGAAAAAGATATCATACGAACGGATCTATAAATCCCAGGAATACCTCTCATCTTTGGGTGATATCCATCATAGGGCACT
TTTTGGTGGCTATACGTTGGCGGTAAATGAGGCTGTGTTTGCCATGGTGTCTGAGGGCGAACTGTATCTGCGAGCGTGTG
AAGAGAGTGCGCAGTACTGTGTAAAACATAATCCGACCTATCTGGAATTGGTAAAACGTGGCAGGCCTGTTCTGTTGAAT
TATTACCGTGTGGACGACGGACTTTGGCAAGATCGGGAAAAGCTCCTGCAACTTTCCAGCTTTGCATTAAAAGCAGCACG
ACAGGAACGTGTCGAGCGGGATAATCGGCGCAGGCTAAAAGATTTGCCCAACCTGACTTTTCCGATTGAAGTTCTCCTCT
ACGAAGCGGGTATTACCAGTGAAATTATGCTCCGTACACTTGGTGCCGAAGAGAGTTGGCTGAAGATCAGAGCCAAAAAT
AAACACCTTGGCATTAAGGTCCTGTTTGCACTTGCGGGGGCAATTGAAGGGTTACATGAGGCGGCGCTCCCGACAGCGAG
GCGTCGGGAGCTTAATGAGTGGTTTAATGCGCTTCCTGTAAGGTCTGATAATCATTCCGGGAAGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

56.65

97.596

0.553

Multiple sequence alignment