Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CO704_RS20065 Genome accession   NZ_CP023525
Coordinates   4216310..4217692 (-) Length   460 a.a.
NCBI ID   WP_008460107.1    Uniprot ID   A0A9W5J693
Organism   Cedecea neteri strain FDAARGOS_392     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4211310..4222692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO704_RS20055 (CO704_20055) ettA 4212574..4214241 (+) 1668 WP_045781279.1 energy-dependent translational throttle protein EttA -
  CO704_RS26270 - 4214413..4214616 (-) 204 WP_138089287.1 hypothetical protein -
  CO704_RS20060 (CO704_20060) nadR 4215031..4216263 (-) 1233 WP_008460108.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  CO704_RS20065 (CO704_20065) radA 4216310..4217692 (-) 1383 WP_008460107.1 DNA repair protein RadA Machinery gene
  CO704_RS20070 (CO704_20070) serB 4217707..4218684 (-) 978 WP_061277283.1 phosphoserine phosphatase -
  CO704_RS20075 (CO704_20075) - 4218834..4219469 (+) 636 WP_061277284.1 YtjB family periplasmic protein -
  CO704_RS20080 (CO704_20080) lplA 4219544..4220560 (+) 1017 WP_061277285.1 lipoate--protein ligase LplA -
  CO704_RS20085 (CO704_20085) yjjJ 4220557..4221885 (-) 1329 WP_061277286.1 type II toxin-antitoxin system HipA family toxin YjjJ -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49583.22 Da        Isoelectric Point: 7.1552

>NTDB_id=248118 CO704_RS20065 WP_008460107.1 4216310..4217692(-) (radA) [Cedecea neteri strain FDAARGOS_392]
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPQVARNERLSGYAGSAGVSRVQKLSDISLEELPRFSTG
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSEQMKTLYVTGEESLQQVAMRAHRLGLPTQNLNMLSETSIE
QICMIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTKGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VMLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTPGSSVMVVWEGTRPLLVEIQALVDQ
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRALPQDLVVFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPQANVPKKIPEGMQVFGVKKLADALSVFDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=248118 CO704_RS20065 WP_008460107.1 4216310..4217692(-) (radA) [Cedecea neteri strain FDAARGOS_392]
GTGGCGAAAGCTCCAAAACGCGCATTTGTTTGTAACGAGTGTGGTGCGGATTACCCGCGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCGTGGAATACCATTACCGAAGTGCGCATCGCCGCTTCTCCACAGGTTGCCCGCAACGAACGTCTTTCTGGCT
ATGCCGGAAGCGCGGGCGTCAGCCGTGTACAAAAGCTCTCGGACATCAGTCTGGAAGAACTGCCGCGCTTTTCCACCGGC
TTTAAAGAGTTTGATCGAGTGCTTGGCGGCGGGGTGGTGCCGGGCAGCGCCATTCTTATCGGCGGTAACCCTGGCGCGGG
GAAATCAACGCTGCTGCTGCAAACGCTTTGCAAGCTGAGCGAGCAAATGAAAACCCTTTACGTCACCGGTGAAGAGTCGC
TTCAGCAGGTGGCGATGCGCGCACATCGTTTGGGTTTGCCGACGCAAAACCTCAATATGCTCTCGGAAACCAGTATCGAA
CAGATCTGTATGATCGCCGAGGAAGAGCAGCCGAAGCTGATGGTGATCGACTCGATCCAGGTGATGCACATGGCGGATGT
GCAGTCTTCGCCAGGCAGCGTGGCCCAGGTGCGTGAAACCGCAGCCTACCTGACGCGCTTTGCGAAGACGAAAGGCGTGG
CGATCGTGATGGTCGGGCACGTGACCAAAGATGGCTCCCTGGCGGGGCCAAAAGTCCTCGAACACTGTATCGACTGCTCC
GTGATGCTTGACGGCGATGCCGATTCCCGCTTCCGTACTCTGCGTAGTCATAAAAACCGCTTTGGCGCGGTGAACGAGCT
GGGCGTGTTCGCGATGACCGAGCAGGGACTGCGTGAAGTCAGCAACCCGTCGGCCATTTTTCTCAGTCGGGGCGATGAAG
TGACGCCGGGCAGCTCTGTGATGGTGGTCTGGGAAGGAACGCGTCCGCTGCTGGTTGAGATCCAGGCGCTGGTGGATCAG
TCGATGATGTCCAACCCTCGCCGCGTGGCCGTTGGCCTGGAGCAAAACCGTCTGGCGATTTTGCTGGCCGTGCTGCACCG
CCACGGCGGCCTGCAAATGGCCGATCAGGACGTGTTTGTAAACGTGGTGGGCGGCGTAAAAGTTACCGAAACCAGCGCCG
ACCTGGCGCTGCTGCTGGCGATGGTTTCCAGCTTACGGGACAGAGCTTTGCCGCAGGATTTAGTAGTGTTTGGCGAAGTC
GGGCTGGCCGGCGAAATCCGCCCGGTACCTAGCGGCCAGGAACGCATTTCCGAAGCGGCAAAACACGGCTTCAAGCGCGC
GATTGTGCCGCAGGCCAACGTACCGAAAAAAATTCCTGAAGGGATGCAGGTCTTCGGCGTGAAAAAACTTGCTGATGCGC
TTTCTGTATTCGACGACTTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

AAA domain (AAA_25)

(89-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.043

100

0.48
  radA Streptococcus pneumoniae Rx1

43.64

99.13

0.433
  radA Streptococcus pneumoniae D39

43.64

99.13

0.433
  radA Streptococcus pneumoniae R6

43.64

99.13

0.433
  radA Streptococcus pneumoniae TIGR4

43.64

99.13

0.433
  radA Streptococcus mitis NCTC 12261

43.64

99.13

0.433
  radA Streptococcus mitis SK321

43.64

99.13

0.433

Multiple sequence alignment