Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CO704_RS15365 Genome accession   NZ_CP023525
Coordinates   3225844..3226473 (-) Length   209 a.a.
NCBI ID   WP_061274115.1    Uniprot ID   A0A291E0H0
Organism   Cedecea neteri strain FDAARGOS_392     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3220844..3231473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO704_RS15350 (CO704_15350) helD 3221077..3223131 (-) 2055 WP_061274111.1 DNA helicase IV -
  CO704_RS15355 (CO704_15355) - 3223262..3223708 (+) 447 WP_061274113.1 YccF domain-containing protein -
  CO704_RS15360 (CO704_15360) yccS 3223721..3225859 (+) 2139 WP_061274342.1 YccS family putative transporter -
  CO704_RS15365 (CO704_15365) sxy/tfoX 3225844..3226473 (-) 630 WP_061274115.1 TfoX/Sxy family DNA transformation protein Regulator
  CO704_RS15370 (CO704_15370) sulA 3226691..3227200 (+) 510 WP_061274117.1 SOS-induced cell division inhibitor SulA -
  CO704_RS15375 (CO704_15375) ompA 3227558..3228613 (+) 1056 WP_061274119.1 porin OmpA -
  CO704_RS15380 (CO704_15380) matP 3228705..3229157 (-) 453 WP_008461251.1 macrodomain Ter protein MatP -
  CO704_RS15385 (CO704_15385) - 3229334..3231088 (+) 1755 WP_061274344.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24191.26 Da        Isoelectric Point: 10.4259

>NTDB_id=248115 CO704_RS15365 WP_061274115.1 3225844..3226473(-) (sxy/tfoX) [Cedecea neteri strain FDAARGOS_392]
MKKVTFIRIHKSREYLSSLGKIGYRPLFGGYSLTVEGVVFAMVSEGELYLRACEQCAEYFIQKSAPPLMHSKRGLPVALN
YYRVDEELWKNPDKLLQLSSLALRSAQREKTQIKIRSLRLKELPNLSLNIEVMLREVGINDPQTLQLLGAKRSWLKLRST
RKTVGIKVLLSLAGAIRGVHEAVLPADVRKELTDWWRRYEQRQQHYSEH

Nucleotide


Download         Length: 630 bp        

>NTDB_id=248115 CO704_RS15365 WP_061274115.1 3225844..3226473(-) (sxy/tfoX) [Cedecea neteri strain FDAARGOS_392]
ATGAAAAAGGTGACATTTATTAGAATTCATAAATCACGGGAATATCTTTCTTCACTGGGGAAAATCGGTTATCGACCGTT
ATTTGGCGGTTATAGTCTGACCGTCGAAGGTGTGGTCTTTGCTATGGTGTCGGAAGGTGAGCTTTACCTGCGGGCTTGTG
AACAGTGTGCGGAGTATTTTATCCAAAAATCGGCACCCCCTCTGATGCACAGTAAACGCGGGCTTCCCGTCGCGCTGAAT
TACTACCGTGTAGATGAAGAGCTTTGGAAAAATCCTGACAAACTCCTCCAGCTCTCTTCCCTGGCGTTAAGAAGCGCCCA
GCGTGAGAAAACACAAATCAAGATACGTTCTCTCCGCCTGAAGGAACTCCCCAATCTTTCTCTGAATATTGAAGTTATGC
TTCGCGAGGTGGGCATCAATGATCCACAAACGCTTCAACTCTTAGGTGCCAAACGGTCATGGCTAAAATTACGCAGCACC
CGAAAAACGGTAGGTATTAAAGTCTTGCTCTCGCTTGCAGGTGCTATTCGTGGTGTTCATGAGGCGGTACTGCCTGCCGA
TGTTCGAAAAGAATTGACGGACTGGTGGCGCCGCTATGAGCAGCGCCAGCAACATTACTCTGAGCACTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(119-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291E0H0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.962

99.522

0.507

Multiple sequence alignment