Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CO712_RS15700 Genome accession   NZ_CP023522
Coordinates   3408408..3409913 (-) Length   501 a.a.
NCBI ID   WP_013699407.1    Uniprot ID   A0A560VPW2
Organism   Burkholderia gladioli pv. gladioli strain FDAARGOS_389     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3403408..3414913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO712_RS15675 (CO712_15675) - 3404400..3405035 (-) 636 WP_013699412.1 LON peptidase substrate-binding domain-containing protein -
  CO712_RS15680 (CO712_15680) rapZ 3405068..3405961 (-) 894 WP_013699411.1 RNase adapter RapZ -
  CO712_RS15685 (CO712_15685) hprK 3406072..3407040 (-) 969 WP_013699410.1 HPr(Ser) kinase/phosphatase -
  CO712_RS15690 (CO712_15690) - 3407166..3407678 (-) 513 WP_096750181.1 PTS sugar transporter subunit IIA -
  CO712_RS15695 (CO712_15695) raiA 3407893..3408258 (-) 366 WP_013699408.1 ribosome-associated translation inhibitor RaiA -
  CO712_RS15700 (CO712_15700) rpoN/rpoN1 3408408..3409913 (-) 1506 WP_013699407.1 RNA polymerase factor sigma-54 Machinery gene
  CO712_RS15705 (CO712_15705) lptB 3410104..3410880 (-) 777 WP_013699406.1 LPS export ABC transporter ATP-binding protein -
  CO712_RS15710 (CO712_15710) lptA 3410877..3411545 (-) 669 WP_013699405.1 lipopolysaccharide transport periplasmic protein LptA -
  CO712_RS15715 (CO712_15715) lptC 3411564..3412178 (-) 615 WP_017918294.1 LPS export ABC transporter periplasmic protein LptC -
  CO712_RS15720 (CO712_15720) - 3412182..3412721 (-) 540 WP_013699403.1 HAD family hydrolase -
  CO712_RS15725 (CO712_15725) kdsD 3412721..3413704 (-) 984 WP_025096995.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 55047.01 Da        Isoelectric Point: 4.9483

>NTDB_id=248103 CO712_RS15700 WP_013699407.1 3408408..3409913(-) (rpoN/rpoN1) [Burkholderia gladioli pv. gladioli strain FDAARGOS_389]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDEWIASPLRVAADGSLIAQSPPSSTPEPMHG
GGSNGSEASGDRAERDDSRNGDDYDYNADSGDSGQWNLDDYGRSSGASDDDDLPPLQVHEASTSLREHLSAQLRVTQAGP
RDRALVMFLIESLDDDGYLGAGLDEVLTDLPEELEVDLDELGAALALLHSFDPAGVGARSASECLRLQLLRLDPSPTRTL
SLDIVSQHLELLAARDFTRLRKQLKANDDELREAHALIRSLEPFPGAAYGKTEADYVVPDIMVRKSGQNWLAELNPEVVP
KLRINHLYANILRNSRGDPGAGSLKQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDQKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=248103 CO712_RS15700 WP_013699407.1 3408408..3409913(-) (rpoN/rpoN1) [Burkholderia gladioli pv. gladioli strain FDAARGOS_389]
ATGAAAGCCAGCCTCCAACTTCGCCTGTCGCAGCACCTCGCGCTCACGCCCCAGCTCCAGCAGTCGATCCGGCTGCTGCA
GCTGTCGACGCTCGAACTGCAGCAGGAAGTCGCGATGGCCGTCGCCCAGAATCCGCTGCTCGAGAACGACGAATGGATCG
CGAGCCCGCTGCGGGTGGCCGCCGACGGCTCGCTGATCGCGCAGAGCCCGCCTTCCTCGACGCCCGAGCCGATGCACGGC
GGCGGCTCGAACGGCAGCGAAGCCTCGGGCGATCGCGCCGAACGCGACGACTCGCGCAATGGCGACGACTACGACTACAA
CGCCGACAGCGGCGATTCGGGTCAGTGGAATCTCGACGACTACGGCCGCTCCTCGGGCGCCTCCGACGATGACGACCTCC
CGCCGCTGCAGGTGCACGAGGCCTCGACCTCGCTGCGCGAGCATCTGTCCGCGCAATTGCGGGTGACCCAGGCGGGTCCG
CGCGACCGCGCGCTGGTGATGTTCCTGATCGAATCGCTCGACGACGACGGTTATCTCGGCGCGGGGCTCGACGAGGTGTT
GACCGACCTGCCCGAGGAACTGGAGGTCGATCTCGACGAACTGGGCGCCGCGCTGGCGCTGCTGCACAGCTTCGACCCGG
CCGGCGTGGGGGCGCGCTCCGCATCAGAATGCTTGCGCCTGCAATTGTTGCGACTCGATCCGTCCCCCACGCGCACGCTG
TCGCTCGACATCGTCTCGCAGCATCTCGAATTGCTGGCCGCGCGCGACTTCACGCGGCTGCGCAAGCAGTTGAAGGCCAA
CGACGACGAGCTGCGCGAGGCCCATGCACTGATCCGCTCGCTCGAGCCCTTCCCGGGCGCCGCCTACGGCAAGACCGAGG
CGGACTACGTGGTGCCCGACATCATGGTCAGGAAGAGCGGCCAGAACTGGCTCGCGGAGCTCAATCCCGAGGTGGTGCCG
AAGCTGCGCATCAACCACCTGTACGCCAATATCCTGCGCAACAGCCGGGGCGATCCGGGCGCCGGTTCGCTCAAGCAGCA
GCTCCAGGAAGCGCGCTGGCTGATCAAGAATATCCAGCAGCGATTCGAGACCATCCTGCGTGTCGCGCAGGCCATCGTGG
AGCGTCAGAAGAACTTTTTTGCGCATGGTGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCTCCCGTGTGACAACCGGCAAGTACATGCTGACCCCGTTCGGCACTCTTGAATTTAAGTACTT
CTTCGGATCGCACGTGTCGACGGATACCGGGGGCGCTGCCTCTTCCACGGCAATCCGCGCCCTCATCAAGCAACTGATAG
GAGCCGAAGACCAGAAATCTCCTCTTTCGGACAGCCGAATAGCCGAGCTGCTGGCGGAACAAGGCTTCGTGGTCGCGCGC
CGCACCGTTGCGAAGTATCGCGAAGCCCTCAAGATCCCCGCGGTGAATCTGCGCAAGTCTCTGTAG

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

68.379

100

0.691

Multiple sequence alignment