Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AOY56_RS17145 Genome accession   NZ_CP028769
Coordinates   3541930..3542535 (-) Length   201 a.a.
NCBI ID   WP_039264376.1    Uniprot ID   -
Organism   Escherichia coli strain A5     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3536930..3547535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY56_RS17125 (AOY56_18235) aes 3536967..3537926 (+) 960 WP_000801846.1 acetyl esterase -
  AOY56_RS17130 (AOY56_18240) hemH 3537923..3538885 (-) 963 WP_001250096.1 ferrochelatase -
  AOY56_RS17135 (AOY56_18245) adk 3539121..3539765 (-) 645 WP_001220233.1 adenylate kinase -
  AOY56_RS17140 (AOY56_18255) htpG 3539946..3541820 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  AOY56_RS17145 (AOY56_18260) recR 3541930..3542535 (-) 606 WP_039264376.1 recombination mediator RecR Machinery gene
  AOY56_RS17150 (AOY56_18265) ybaB 3542535..3542864 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  AOY56_RS17155 (AOY56_18270) dnaX 3542917..3544848 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  AOY56_RS17160 (AOY56_18275) apt 3544977..3545528 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  AOY56_RS17165 (AOY56_18285) ybaN 3545681..3546058 (-) 378 WP_001188905.1 DUF454 family protein -
  AOY56_RS17170 (AOY56_18290) priC 3546128..3546655 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  AOY56_RS17175 (AOY56_18295) rsmS 3546669..3546830 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  AOY56_RS22895 - 3546883..3546981 (-) 99 Protein_3378 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21934.94 Da        Isoelectric Point: 4.7740

>NTDB_id=248085 AOY56_RS17145 WP_039264376.1 3541930..3542535(-) (recR) [Escherichia coli strain A5]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTQAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=248085 AOY56_RS17145 WP_039264376.1 3541930..3542535(-) (recR) [Escherichia coli strain A5]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCAGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443