Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   CO688_RS01830 Genome accession   NZ_CP023516
Coordinates   370158..372551 (-) Length   797 a.a.
NCBI ID   WP_192940547.1    Uniprot ID   -
Organism   Pasteurella multocida strain FDAARGOS_384     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 365158..377551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO688_RS01810 (CO688_01810) kdsB 366376..367152 (-) 777 WP_096743089.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CO688_RS01815 (CO688_01815) - 367154..367336 (-) 183 WP_096743090.1 Trm112 family protein -
  CO688_RS01820 (CO688_01820) lpxK 367348..368325 (-) 978 WP_083002776.1 tetraacyldisaccharide 4'-kinase -
  CO688_RS01825 (CO688_01825) msbA 368357..370105 (-) 1749 WP_005716843.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  CO688_RS01830 (CO688_01830) rec2 370158..372551 (-) 2394 WP_192940547.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CO688_RS01835 (CO688_01835) dksA 372849..373286 (+) 438 WP_010906892.1 RNA polymerase-binding protein DksA -
  CO688_RS01840 (CO688_01840) pcnB 373374..374879 (+) 1506 WP_010906893.1 polynucleotide adenylyltransferase PcnB -
  CO688_RS01845 (CO688_01845) folK 374891..375388 (+) 498 WP_010906894.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  CO688_RS01850 (CO688_01850) - 375375..376457 (-) 1083 WP_010906895.1 homoserine O-acetyltransferase -
  CO688_RS01855 (CO688_01855) - 376620..377330 (+) 711 WP_096743091.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 91094.54 Da        Isoelectric Point: 9.9411

>NTDB_id=248058 CO688_RS01830 WP_192940547.1 370158..372551(-) (rec2) [Pasteurella multocida strain FDAARGOS_384]
MKNALLSISVVTVLSACSLLWLPEHVLLHWHMTLLVFVLLLVSIIICILCGKNHWISLLIFVLSSVGILGYIHDQARQTL
LQADLIAQLPRKIETEFKIIEVLQQKNYQTFVVSAQLIPQQAKQKMFLQWHAQEKAQIGEVWKGELRLRPISSRLNMGGF
DKQQWYFAKGITAYATVKSAVKISEQLSWREKWLQETIKQTSTLDYQGLLIALAFGERAWLPTDIWQTYQKTNTAHVIAI
SGLHIGLAMGIGYFFIRFIQFVLPLKWVTPTLPIFVGLLFAWFYAELAGFTIPTTRAFFALAVVTLLRLWRRFYSVWQLL
LLVVALLLLANPLIVLSSSFWLSVSAVSALIIWYQIFPFSLLHWRGKSLTESPWRKCCWFFSLLHLQLGLLWLFTPVQLL
LFQGISLTSFMANVLVVPIYSVILVPLILFAVITQGAFSSWFLANTVAKQVTILLTPLQSHWVVFSQRGILCLIAILALS
FIILIWYLYDFKKESLKCYIKVPRFFHLHQMRQLNPSLKWKIYSLATVISLYCFLQVLYKEISQPLWRLDTLDVGQGLAN
LIVVNGKGVLYDTGASWAGGSMAELEIIPYLQREGIALEQVILSHDDNDHVGGAETILKHYPQAKLMTASAQHYGKTDRT
FCEAGKTWTWQHLTFKALSPTKTVKRAKNTDSCVLLISDGSYHILLTGDADIAAEKQFVKQLSQLDVLQVGHHGSKTSTG
YELLYQTRPKIALISSGRWNPWQFPHVQVVQRLKRYQTTVYNTGELGQISLLFHAKHIEIQTARKDFSPWYRRLIGL

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=248058 CO688_RS01830 WP_192940547.1 370158..372551(-) (rec2) [Pasteurella multocida strain FDAARGOS_384]
ATGAAAAACGCTCTTTTGTCAATATCTGTTGTGACTGTATTAAGTGCATGTTCGTTACTTTGGCTACCTGAACATGTCTT
GCTCCATTGGCATATGACATTGTTAGTCTTCGTATTATTGCTTGTTAGCATAATCATTTGTATTCTTTGTGGCAAAAATC
ACTGGATTTCGCTTCTGATCTTTGTACTGAGTTCGGTAGGCATTTTAGGCTATATCCACGATCAAGCTCGTCAGACATTA
TTGCAAGCTGACTTGATTGCTCAACTGCCTCGAAAGATAGAGACAGAATTTAAAATCATTGAAGTATTACAACAAAAAAA
CTATCAAACTTTTGTAGTTTCGGCACAATTGATACCGCAACAGGCAAAACAAAAAATGTTTCTTCAATGGCACGCGCAAG
AAAAAGCACAGATTGGCGAGGTTTGGAAAGGAGAATTACGACTCAGACCGATTTCATCAAGGCTCAATATGGGCGGTTTT
GATAAACAGCAATGGTATTTCGCCAAAGGCATTACCGCTTATGCGACGGTAAAAAGTGCGGTTAAAATAAGTGAACAGTT
ATCTTGGCGAGAAAAATGGTTACAAGAAACGATAAAACAGACTTCAACATTAGATTATCAAGGACTGCTAATCGCGTTGG
CTTTTGGTGAACGGGCATGGTTACCCACAGATATTTGGCAAACTTATCAAAAAACTAACACCGCACATGTGATTGCCATA
TCGGGTTTACATATTGGACTTGCGATGGGAATAGGTTATTTTTTTATCCGTTTCATTCAGTTTGTGTTGCCATTAAAGTG
GGTGACACCAACCTTACCAATATTCGTAGGGCTTCTTTTTGCCTGGTTTTATGCGGAGCTAGCGGGTTTTACTATACCGA
CGACAAGAGCATTTTTCGCTCTCGCCGTTGTCACTTTGCTACGACTCTGGCGGCGATTTTATAGTGTTTGGCAACTTCTT
TTATTGGTAGTTGCTTTGTTATTGTTAGCAAATCCCTTAATTGTTTTATCCAGTAGCTTTTGGCTGTCAGTGAGCGCAGT
CAGTGCTCTGATTATTTGGTACCAAATATTCCCCTTCTCGTTATTACACTGGCGAGGAAAAAGTCTTACAGAGAGTCCTT
GGCGAAAATGTTGTTGGTTCTTTAGTCTTCTTCATTTACAACTTGGCTTATTATGGCTTTTTACCCCTGTTCAATTATTG
CTTTTTCAGGGAATATCTTTAACAAGCTTTATGGCGAATGTGCTTGTCGTCCCTATTTATAGTGTGATTTTAGTACCATT
GATTTTATTTGCGGTGATCACACAGGGGGCTTTTTCCTCTTGGTTTCTCGCAAATACTGTCGCGAAACAGGTCACGATAC
TTTTAACGCCATTACAATCTCATTGGGTTGTCTTCTCACAGCGGGGAATACTCTGTCTGATCGCGATCTTAGCTTTAAGC
TTTATTATATTGATTTGGTATCTGTATGATTTTAAAAAAGAATCACTTAAGTGCTATATCAAAGTGCCGCGTTTTTTTCA
TCTTCATCAAATGCGACAGTTAAATCCGTCTTTAAAATGGAAAATTTATTCCCTTGCTACAGTCATCAGTCTTTATTGTT
TTTTACAGGTACTTTATAAGGAGATATCTCAACCCCTTTGGCGTTTAGATACGCTCGATGTGGGGCAGGGGTTAGCTAAC
TTGATTGTCGTGAATGGGAAAGGGGTTTTGTATGATACGGGGGCATCTTGGGCGGGAGGAAGTATGGCGGAACTGGAAAT
TATACCTTATTTACAAAGAGAGGGGATTGCGTTAGAACAGGTGATTTTAAGTCATGATGATAATGATCATGTTGGGGGCG
CGGAAACAATTCTAAAACATTACCCTCAAGCGAAGCTGATGACAGCGTCTGCTCAACATTACGGAAAAACTGACCGCACT
TTTTGTGAAGCCGGCAAAACTTGGACTTGGCAACACTTAACATTCAAAGCCCTTTCACCGACTAAAACAGTGAAGCGAGC
GAAAAATACGGACTCTTGTGTGTTACTGATCTCAGATGGTTCTTATCATATCCTTTTAACGGGCGATGCAGATATTGCTG
CGGAAAAGCAGTTCGTGAAGCAGTTAAGTCAACTTGATGTATTACAAGTTGGACATCATGGCAGTAAAACCTCAACTGGA
TATGAACTGCTTTATCAAACACGACCAAAAATCGCGCTGATTTCAAGTGGTCGTTGGAATCCATGGCAATTTCCACATGT
TCAGGTTGTACAACGACTTAAACGTTATCAAACGACAGTATATAACACTGGCGAGTTAGGACAAATTAGCTTACTTTTTC
ATGCAAAACACATCGAAATTCAAACCGCAAGAAAGGATTTTTCGCCTTGGTATCGTAGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-736)

Domain of unknown function (DUF4131) (DUF4131)

(32-180)

Competence protein (Competence)

(213-487)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.504

100

0.516

Multiple sequence alignment