Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CO692_RS08165 Genome accession   NZ_CP023515
Coordinates   1481232..1482602 (+) Length   456 a.a.
NCBI ID   WP_096742005.1    Uniprot ID   A0A291DMD2
Organism   Enterococcus sp. FDAARGOS_375     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1476232..1487602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO692_RS08135 (CO692_08135) - 1476698..1477516 (+) 819 WP_077453236.1 ZIP family metal transporter -
  CO692_RS08140 (CO692_08140) - 1477572..1477775 (-) 204 WP_010748476.1 hypothetical protein -
  CO692_RS08145 (CO692_08145) - 1477926..1478327 (+) 402 WP_096742003.1 DUF4809 family protein -
  CO692_RS08150 (CO692_08150) - 1478432..1479676 (-) 1245 WP_096742004.1 glutamate-5-semialdehyde dehydrogenase -
  CO692_RS08155 (CO692_08155) proB 1479673..1480488 (-) 816 WP_008376761.1 glutamate 5-kinase -
  CO692_RS08160 (CO692_08160) - 1480678..1481187 (+) 510 WP_010748479.1 hypothetical protein -
  CO692_RS08165 (CO692_08165) radA 1481232..1482602 (+) 1371 WP_096742005.1 DNA repair protein RadA Machinery gene
  CO692_RS18040 - 1482604..1482735 (+) 132 WP_254907659.1 hypothetical protein -
  CO692_RS08170 (CO692_08170) - 1482771..1483910 (+) 1140 WP_005226396.1 PIN/TRAM domain-containing protein -
  CO692_RS08175 (CO692_08175) gltX 1484080..1485537 (+) 1458 WP_016608945.1 glutamate--tRNA ligase -
  CO692_RS08180 (CO692_08180) epsC 1485798..1486334 (+) 537 WP_026008130.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49620.32 Da        Isoelectric Point: 8.3034

>NTDB_id=248039 CO692_RS08165 WP_096742005.1 1481232..1482602(+) (radA) [Enterococcus sp. FDAARGOS_375]
MAKKAKSQFVCQNCGYSSLKYLGKCPNCGSWNSMVEEVIQETADRRVRTTLTGQKMQPTKIADVVPKKEPRVQTKLAELN
RVLGGGVVPGSLILIGGDPGIGKSTLLLQVSQQLAAIGGTVLYVSGEESAEQIKMRAQRLGAIDTEFYLYGETDMSEISK
AIENIRPDYVIIDSIQTMTQPDITSVAGSVSQVRETTAELLKIAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GEKHHSFRILRAVKNRFGSTNEIGIFEMEEGGLKEVANPSQVFLEERLEGATGSAIVVAMEGSRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLNEPAIDLAIAVSIASSYKEKGTSPTECFIGEIGLTG
EIRRVNAIEQRVKEVQKLGFTKVYLPKNNLTGWQPPKGIEVEGVSTLAETLRKVFR

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=248039 CO692_RS08165 WP_096742005.1 1481232..1482602(+) (radA) [Enterococcus sp. FDAARGOS_375]
ATGGCAAAAAAAGCAAAAAGTCAATTTGTCTGTCAAAATTGTGGGTATAGTTCCCTTAAATATTTAGGGAAATGCCCCAA
TTGCGGCAGCTGGAATTCAATGGTGGAAGAAGTGATTCAAGAAACCGCCGATCGTCGAGTACGTACGACATTGACGGGGC
AAAAGATGCAGCCGACGAAAATCGCCGATGTCGTACCGAAAAAAGAACCGCGGGTCCAAACGAAACTTGCTGAGTTGAAT
CGCGTCTTAGGCGGCGGCGTGGTCCCAGGCTCCTTGATTTTGATCGGTGGGGATCCAGGGATCGGAAAATCGACGCTGCT
CTTGCAAGTTTCCCAGCAATTAGCAGCGATCGGCGGGACGGTCTTGTATGTGTCAGGAGAAGAAAGTGCCGAACAAATCA
AAATGCGGGCGCAGCGCTTAGGCGCCATCGACACAGAATTTTATCTCTATGGGGAAACGGACATGTCAGAGATCAGTAAA
GCGATCGAAAACATCCGCCCAGATTATGTGATCATCGATTCGATCCAAACCATGACCCAACCGGATATCACCAGCGTGGC
AGGCAGTGTCAGCCAAGTGCGAGAAACGACCGCAGAATTGCTGAAAATCGCCAAAACCAATGGCATCGCCATCTTTATCG
TTGGCCACGTGACGAAGGAAGGCTCGATCGCAGGACCGCGGATGCTGGAGCATATGGTGGATACCGTCTTGTATTTCGAA
GGCGAAAAGCACCACAGTTTTCGAATTTTGCGGGCCGTCAAAAACCGCTTTGGGTCCACCAATGAGATCGGGATTTTTGA
AATGGAAGAAGGCGGGTTGAAAGAAGTCGCCAATCCGTCACAAGTCTTTTTGGAAGAACGCTTAGAAGGCGCAACTGGAT
CGGCGATCGTAGTGGCAATGGAAGGCAGTCGGCCAATCTTGGTGGAAATCCAAGCACTGGTCACGCCAACGATGTTCGGC
AATGCCAAACGCACGACGACGGGGCTAGACTTCAACCGCGTCTCGCTGATCATGGCGGTTTTAGAAAAACGGGCAGGCTT
GCTGCTGCAAAATCAAGATGCCTACTTAAAAGCAGCCGGCGGGGTCAAATTAAATGAACCCGCGATCGATCTAGCGATCG
CTGTTAGTATCGCGTCTAGCTACAAAGAAAAAGGCACCAGCCCGACGGAGTGTTTTATCGGTGAAATTGGCTTGACGGGT
GAGATTCGCCGAGTCAACGCGATCGAGCAACGGGTCAAAGAGGTGCAAAAACTAGGTTTTACGAAAGTTTATTTGCCGAA
AAATAATCTGACTGGCTGGCAGCCGCCCAAAGGCATCGAAGTCGAAGGCGTGTCTACCTTAGCCGAAACCTTGCGGAAAG
TCTTCCGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A291DMD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

74.505

99.781

0.743
  radA Streptococcus mitis SK321

74.286

99.781

0.741
  radA Streptococcus pneumoniae Rx1

74.286

99.781

0.741
  radA Streptococcus pneumoniae D39

74.286

99.781

0.741
  radA Streptococcus pneumoniae R6

74.286

99.781

0.741
  radA Streptococcus pneumoniae TIGR4

74.286

99.781

0.741
  radA Bacillus subtilis subsp. subtilis str. 168

66.962

98.904

0.662

Multiple sequence alignment