Detailed information NTG0248010

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY58_RS17635
• Genome accession: NZ_CP028767
• Coordinates: 3707613..3708605 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A7
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3702613..3713605

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY58_RS17610 (AOY58_18765)	ygbN	3703268..3704632 (+)	1365	WP_000104439.1	GntP family transporter	-
AOY58_RS17615 (AOY58_18770)	-	3704671..3704907 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AOY58_RS17620 (AOY58_18775)	-	3704918..3706345 (-)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AOY58_RS17625 (AOY58_18780)	-	3706345..3706938 (-)	594	WP_000767716.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AOY58_RS17630 (AOY58_18785)	-	3707085..3707492 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
AOY58_RS17635 (AOY58_18790)	rpoS	3707613..3708605 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY58_RS17640 (AOY58_18795)	nlpD	3708668..3709762 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AOY58_RS17645 (AOY58_18800)	pcm	3709947..3710573 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY58_RS17650 (AOY58_18805)	surE	3710567..3711328 (-)	762	WP_001447327.1	5'/3'-nucleotidase SurE	-
AOY58_RS17655 (AOY58_18810)	truD	3711309..3712358 (-)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
AOY58_RS17660 (AOY58_18815)	ispF	3712355..3712834 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY58_RS17665 (AOY58_18820)	ispD	3712834..3713544 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=248010 AOY58_RS17635 WP_000081550.1 3707613..3708605(-) (rpoS) [Escherichia coli strain A7]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=248010 AOY58_RS17635 WP_000081550.1 3707613..3708605(-) (rpoS) [Escherichia coli strain A7]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715