Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CO687_RS05855 Genome accession   NZ_CP023511
Coordinates   1189465..1191267 (+) Length   600 a.a.
NCBI ID   WP_082307461.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1184465..1196267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS05835 (CO687_05835) nagB 1184766..1185473 (+) 708 WP_096755048.1 glucosamine-6-phosphate deaminase -
  CO687_RS05840 (CO687_05840) - 1185628..1186995 (+) 1368 WP_253678847.1 DUF1958 domain-containing protein -
  CO687_RS05845 (CO687_05845) - 1187094..1188266 (+) 1173 WP_096755050.1 MFS transporter -
  CO687_RS05850 (CO687_05850) coiA 1188351..1189304 (+) 954 WP_096755425.1 competence protein CoiA family protein Machinery gene
  CO687_RS05855 (CO687_05855) pepF 1189465..1191267 (+) 1803 WP_082307461.1 oligoendopeptidase F Regulator
  CO687_RS05860 (CO687_05860) - 1191269..1191970 (+) 702 WP_096755051.1 O-methyltransferase -
  CO687_RS05865 (CO687_05865) prsA 1192158..1193087 (+) 930 WP_096755052.1 peptidylprolyl isomerase PrsA -
  CO687_RS05870 (CO687_05870) - 1193316..1193801 (+) 486 WP_061602167.1 LURP-one-related family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69400.39 Da        Isoelectric Point: 4.4968

>NTDB_id=247984 CO687_RS05855 WP_082307461.1 1189465..1191267(+) (pepF) [Streptococcus gordonii strain FDAARGOS_371]
MAKQRNEIEEKYTWDLSTIFPTDEAFETELAQVSEELKNASNLAGHLLDSAESLLTTTEIQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMTIYSEFGQTFAFYEPEFMEITEDQYQAFLAEKPELQTYQHYFDKLLQKKEHILTQREEELLAGA
GEIFGAASETFAILDNADIVFPVVHNEKGEEVQLTHGNYISLVESKNREVRKEAYEALYSVYEQYQHTYAKTLQTNVKVQ
NYNAKVRKFSSAREAALSANFIPESVYDSLVSAVDKHLPLLQRYIALRAKILGISDLKMYDLYTPLSETDYKFTYEEALA
KSEEVLAILGEDYLSRVKTAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLKKEDNPQIQYEWARIPHFYYNYYVFQYSTGFAAASALAEKIVHGSQEDKDKYLDYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=247984 CO687_RS05855 WP_082307461.1 1189465..1191267(+) (pepF) [Streptococcus gordonii strain FDAARGOS_371]
ATGGCTAAACAAAGAAATGAAATTGAAGAAAAATATACATGGGATTTAAGTACGATTTTCCCTACAGATGAAGCCTTTGA
GACTGAACTTGCACAGGTTTCTGAAGAATTAAAAAATGCAAGCAATCTAGCAGGACATCTGCTGGATTCGGCAGAAAGTC
TTTTGACAACAACGGAAATTCAATTAGACTTGATGCGCCGTATTGAGAAACTTTATTCCTATGCTCACATGAAGAATGAC
CAGGATACTCGTGTAGCAAAATATCAGGAATACCAAGCTAAAGGAATGACTATTTATAGTGAGTTTGGCCAAACTTTTGC
TTTCTATGAGCCAGAATTCATGGAAATTACAGAAGATCAATACCAAGCTTTTTTGGCTGAAAAACCTGAACTACAAACCT
ATCAACATTATTTTGATAAGCTTTTGCAGAAGAAGGAACACATCCTGACCCAGCGTGAAGAGGAGTTGTTGGCTGGTGCT
GGAGAAATCTTTGGTGCTGCCAGTGAAACCTTTGCTATTTTGGACAATGCGGATATCGTTTTTCCGGTGGTTCACAATGA
AAAGGGCGAAGAAGTCCAGTTGACACATGGGAACTATATTTCTCTAGTAGAGTCTAAAAATCGAGAAGTTCGTAAGGAAG
CTTATGAAGCTCTTTATAGTGTATATGAGCAGTATCAGCATACTTATGCTAAGACCTTGCAGACAAATGTTAAGGTTCAA
AATTACAACGCGAAAGTCCGCAAGTTCTCATCTGCCCGTGAGGCTGCTTTATCGGCTAACTTTATCCCGGAAAGTGTCTA
TGATAGCTTGGTTTCTGCTGTAGACAAACACCTTCCTCTGTTACAACGTTATATTGCCTTGCGAGCAAAGATTTTGGGTA
TTTCTGATTTGAAGATGTACGATTTGTACACGCCTTTATCAGAAACAGATTACAAGTTCACTTATGAAGAAGCCTTGGCT
AAGTCTGAGGAAGTCTTGGCAATTTTGGGTGAGGATTATTTGAGTCGAGTGAAGACAGCCTTCTCAGAGCGCTGGATTGA
TGTTTATGAAAATCAAGGTAAGCGCTCAGGAGCATACTCAGGTGGCTCTTATGATACCAATGCTTTTATGTTGCTTAACT
GGCAGGATACGCTGGACAATCTCTTTACCTTGGTGCACGAGACAGGCCACAGTATGCACTCCAGCTATACTCGTGAGACC
CAGCCTTATGTTTACGGAGACTATTCTATCTTCCTAGCTGAGATTGCTTCAACGACCAATGAAAATATCCTGACAGAGAA
GCTCTTGGAAGAAGTAGAAGACGATGCTACTCGCTTTGCGATTCTTAATCACTTTTTGGATGGCTTTAGAGGAACGGTCT
TCCGTCAAACTCAGTTTGCTGAATTTGAGCATGCTATCCACAAGGCTGACCAAGAAGGACAAGTGTTGACTAGCGAGTTT
CTCAATGAGCTATATGCAGACTTAAACGAGAAATACTACGGCTTGAAAAAAGAAGACAATCCGCAGATTCAGTACGAATG
GGCACGCATTCCTCACTTCTACTATAATTATTATGTTTTCCAATACTCGACAGGATTTGCGGCCGCTTCGGCCTTGGCCG
AAAAGATTGTCCATGGTAGCCAAGAAGACAAGGACAAGTATCTGGATTATCTCAAAGCTGGGAACTCTGACTATCCGCTC
AATGTCATTAAAAAGGCAGGTGTGGATATGGAAAAAGAAGACTATCTAAATGCTGCCTTTGCAGTCTTTGAGCGTCGCTT
GGATGAATTTGAAGCCTTGGTAGAAAAGTTGGGACTGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

68.456

99.333

0.68

Multiple sequence alignment