Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CO687_RS02215 Genome accession   NZ_CP023511
Coordinates   462890..464257 (-) Length   455 a.a.
NCBI ID   WP_096754864.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_371     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 457890..469257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO687_RS02190 (CO687_02190) gltX 458994..460451 (-) 1458 WP_096754862.1 glutamate--tRNA ligase -
  CO687_RS02195 (CO687_02195) - 460601..461095 (-) 495 WP_008808198.1 carbonic anhydrase -
  CO687_RS10640 (CO687_02200) - 461232..461354 (-) 123 Protein_418 TIGR00266 family protein -
  CO687_RS02205 (CO687_02205) - 461500..461985 (-) 486 WP_096754863.1 GNAT family N-acetyltransferase -
  CO687_RS02210 (CO687_02210) - 462067..462777 (-) 711 WP_008808197.1 TIGR00266 family protein -
  CO687_RS02215 (CO687_02215) radA 462890..464257 (-) 1368 WP_096754864.1 DNA repair protein RadA Machinery gene
  CO687_RS02220 (CO687_02220) - 464296..464739 (-) 444 WP_096754865.1 dUTP diphosphatase -
  CO687_RS02225 (CO687_02225) - 464824..465273 (-) 450 WP_045634456.1 8-oxo-dGTP diphosphatase -
  CO687_RS02235 (CO687_02235) - 465538..466227 (-) 690 WP_008808191.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  CO687_RS02240 (CO687_02240) - 466406..468175 (-) 1770 WP_061583176.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49773.11 Da        Isoelectric Point: 5.7873

>NTDB_id=247939 CO687_RS02215 WP_096754864.1 462890..464257(-) (radA) [Streptococcus gordonii strain FDAARGOS_371]
MTIAKKKTTFVCQNCEYHSPKYLGRCPNCGAWSSFVEEVEAAEVKHARVSLTGEKTRPMKLAEVTSIDVNRTKTEMDEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSHQGTVLYVSGEESAEQIKLRAERLGDIDSEFYLYAETNMQNIRTE
IEKIKPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVVNPSEVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRANLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDLPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLNGLKVPDNIQVIGVTTIGEVLKKVFS

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=247939 CO687_RS02215 WP_096754864.1 462890..464257(-) (radA) [Streptococcus gordonii strain FDAARGOS_371]
ATTACCATCGCTAAGAAAAAAACGACCTTTGTGTGTCAAAATTGTGAATATCATTCGCCCAAGTATCTAGGTCGCTGTCC
TAATTGTGGAGCTTGGTCTTCTTTTGTTGAGGAAGTAGAGGCTGCTGAGGTCAAGCATGCTCGTGTTTCCTTGACGGGTG
AAAAGACCCGACCTATGAAGCTGGCTGAGGTCACTTCGATTGATGTTAATCGGACCAAGACGGAAATGGACGAGTTCAAT
CGTGTGCTGGGTGGTGGAGTCGTGCCTGGCAGTCTGGTTCTGATTGGTGGAGATCCTGGTATCGGGAAGTCCACCCTGCT
TTTGCAGGTGTCCACTCAGCTTTCTCATCAGGGCACCGTTCTCTATGTCAGCGGGGAGGAATCAGCTGAGCAGATTAAGC
TGCGGGCGGAACGCCTCGGTGATATTGACAGTGAATTTTATCTCTACGCCGAGACCAATATGCAAAATATCCGCACAGAG
ATTGAGAAAATCAAACCAGATTTTCTGATTATTGACTCCATTCAGACAGTTATGTCGCCAGAAATTTCCAGTGTCCAAGG
CTCTGTTTCGCAAGTCCGAGAGGTGACGGCTGAGCTCATGCAGCTGGCCAAGACCAATAATATCGCGACCTTTATCGTTG
GTCACATGACTAAGGAAGGGACCTTGGCCGGTCCTCGGACGCTAGAGCACATGGTGGATACCGTGCTTTATTTTGAGGGC
GAACGCCAGCACACTTTCCGTATCTTGAGAGCAGTCAAGAACCGCTTTGGCTCAACCAATGAGATTGGCATTTTTGAGAT
GCAATCTGGCGGGCTAGTTGAGGTTGTCAATCCCAGTGAAGTATTTTTAGAAGAGCGCCTGGATGGTGCGACAGGCTCTT
CCATCGTCGTGACCATGGAAGGAACGCGGCCAATTTTGGCAGAGGTGCAGGCTTTGGTTACTCCGACCATGTTCGGCAAT
GCCAAACGGACCACGACTGGACTGGACTTTAACCGAGCTAACCTCATCATGGCGGTTCTAGAAAAACGGGCAGGACTCCT
CCTGCAAAATCAAGATGCCTACCTCAAGTCTGCTGGCGGCGTCAAGCTAGATGAGCCGGCTATTGATTTGGCGGTAGCGG
TAGCCATTGCTTCCAGCTACAAGGATTTGCCGACCAATCCCCAAGAGTGCTTTATCGGTGAAATTGGCCTGACTGGAGAA
ATTCGTCGGGTTAACCGTATCGAGCAGCGTATCAACGAAGCAGCAAAGCTGGGCTTCACCAAAGTCTACGCTCCTAAAAA
CTCTCTGAACGGCCTCAAAGTTCCAGATAATATCCAAGTCATTGGTGTGACAACGATTGGGGAAGTATTAAAGAAAGTAT
TTTCTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(362-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

91.17

99.56

0.908
  radA Streptococcus pneumoniae Rx1

90.949

99.56

0.905
  radA Streptococcus pneumoniae D39

90.949

99.56

0.905
  radA Streptococcus pneumoniae R6

90.949

99.56

0.905
  radA Streptococcus pneumoniae TIGR4

90.949

99.56

0.905
  radA Streptococcus mitis SK321

90.949

99.56

0.905
  radA Bacillus subtilis subsp. subtilis str. 168

62.472

99.56

0.622

Multiple sequence alignment