Detailed information NTG0247931

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY61_RS19095
• Genome accession: NZ_CP028766
• Coordinates: 3900162..3901154 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A8
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3895162..3906154

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY61_RS19070 (AOY61_20255)	ygbN	3895817..3897181 (+)	1365	WP_000104439.1	GntP family transporter	-
AOY61_RS19075 (AOY61_20260)	-	3897220..3897456 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AOY61_RS19080 (AOY61_20265)	-	3897467..3898894 (-)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AOY61_RS19085 (AOY61_20270)	-	3898894..3899487 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AOY61_RS19090 (AOY61_20275)	-	3899634..3900041 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
AOY61_RS19095 (AOY61_20280)	rpoS	3900162..3901154 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY61_RS19100 (AOY61_20285)	nlpD	3901217..3902311 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AOY61_RS19105 (AOY61_20290)	pcm	3902496..3903122 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY61_RS19110 (AOY61_20295)	surE	3903116..3903877 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY61_RS19115 (AOY61_20300)	truD	3903858..3904907 (-)	1050	WP_000568921.1	tRNA pseudouridine(13) synthase TruD	-
AOY61_RS19120 (AOY61_20305)	ispF	3904904..3905383 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY61_RS19125 (AOY61_20310)	ispD	3905383..3906093 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=247931 AOY61_RS19095 WP_000081550.1 3900162..3901154(-) (rpoS) [Escherichia coli strain A8]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=247931 AOY61_RS19095 WP_000081550.1 3900162..3901154(-) (rpoS) [Escherichia coli strain A8]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715