Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AOY61_RS18790 Genome accession   NZ_CP028766
Coordinates   3843283..3843798 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain A8     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3838283..3848798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY61_RS18765 (AOY61_19950) ygaZ 3838682..3839419 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  AOY61_RS18770 (AOY61_19955) ygaH 3839409..3839744 (+) 336 WP_000119764.1 L-valine transporter subunit YgaH -
  AOY61_RS18775 (AOY61_19960) emrR 3839835..3840365 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AOY61_RS18780 (AOY61_19965) emrA 3840492..3841664 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AOY61_RS18785 (AOY61_19970) emrB 3841681..3843219 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AOY61_RS18790 (AOY61_19975) luxS 3843283..3843798 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AOY61_RS18795 (AOY61_19980) gshA 3843948..3845504 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  AOY61_RS18800 (AOY61_19985) yqaA 3845577..3846005 (-) 429 WP_001287457.1 YqaA family protein -
  AOY61_RS18805 (AOY61_19990) yqaB 3846002..3846568 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AOY61_RS18835 (AOY61_20020) csrA 3848161..3848346 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=247928 AOY61_RS18790 WP_001130211.1 3843283..3843798(-) (luxS) [Escherichia coli strain A8]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=247928 AOY61_RS18790 WP_001130211.1 3843283..3843798(-) (luxS) [Escherichia coli strain A8]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment