Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CO686_RS09280 Genome accession   NZ_CP023507
Coordinates   1889435..1890772 (+) Length   445 a.a.
NCBI ID   WP_253665855.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1884435..1895772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS10385 (CO686_09250) comW 1885876..1886112 (+) 237 WP_000939512.1 sigma(X)-activator ComW -
  CO686_RS09255 (CO686_09255) - 1886354..1887640 (+) 1287 WP_049549871.1 adenylosuccinate synthase -
  CO686_RS09260 (CO686_09260) tadA 1887841..1888308 (+) 468 WP_000386706.1 tRNA adenosine(34) deaminase TadA -
  CO686_RS09270 (CO686_09270) - 1888494..1888937 (+) 444 WP_049549869.1 dUTP diphosphatase -
  CO686_RS09275 (CO686_09275) - 1888947..1889414 (+) 468 WP_000796429.1 isochorismatase family cysteine hydrolase -
  CO686_RS09280 (CO686_09280) radA 1889435..1890772 (+) 1338 WP_253665855.1 DNA repair protein RadA Machinery gene
  CO686_RS09285 (CO686_09285) - 1890845..1891339 (+) 495 WP_025171793.1 carbonic anhydrase -
  CO686_RS09290 (CO686_09290) - 1891553..1892521 (+) 969 WP_096753744.1 ribose-phosphate diphosphokinase -
  CO686_RS09295 (CO686_09295) - 1892641..1893078 (+) 438 WP_000076504.1 CoA-binding protein -
  CO686_RS09300 (CO686_09300) - 1893108..1894118 (-) 1011 WP_000009147.1 YeiH family protein -
  CO686_RS09305 (CO686_09305) - 1894270..1895439 (+) 1170 WP_049549868.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 48709.89 Da        Isoelectric Point: 5.1387

>NTDB_id=247894 CO686_RS09280 WP_253665855.1 1889435..1890772(+) (radA) [Streptococcus oralis strain FDAARGOS_367]
MCQNCEYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTDMEEFNRVLGGGVVPG
SLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRSEVERIQPDFLI
IDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILR
AVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDF
NRASLIMAVLEKRAGFLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQR
INEAEKLGFTKIYVPKNSLTGITPPKEIEVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=247894 CO686_RS09280 WP_253665855.1 1889435..1890772(+) (radA) [Streptococcus oralis strain FDAARGOS_367]
ATTTGTCAAAATTGTGAATATAATTCACCTAAGTATCTAGGGCGTTGTCCTAACTGTGGGTCTTGGTCTTCTTTTGTAGA
AGAGGTTGAGGTTGCCGAGGTCAAGAATGCACGAGTGTCCTTGACAGGTGAAAAAACCAAGCCTATGAAACTGGCTGAGG
TGACTTCCATCAATGTCAATCGAACCAAGACGGATATGGAGGAATTCAACCGTGTGCTTGGAGGCGGAGTGGTACCGGGG
AGTCTCGTTCTTATCGGTGGGGATCCAGGAATCGGGAAATCAACCCTTCTCCTACAAGTTTCAACGCAGCTGTCACAAGT
GGGTACGGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAGTTACGGGCAGAGCGCTTGGGTGATATTGATA
GTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGATCTGAGGTGGAGCGCATCCAACCAGATTTTCTCATC
ATCGACTCTATCCAGACGATTATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGTGTCTCAGGTGCGTGAGGTGACCGC
TGAGCTTATGCAGCTGGCTAAGACCAATAACATTGCCATCTTTATCGTAGGGCATGTGACCAAGGAAGGGACCTTGGCGG
GTCCGCGTATGTTGGAGCATATGGTAGATACAGTGCTTTACTTTGAAGGGGAACGTCACCATACCTTTCGTATCTTGAGA
GCAGTCAAAAACCGTTTTGGTTCCACTAATGAGATTGGCATCTTTGAGATGCAGTCGGGTGGATTGGTTGAGGTGCTCAA
TCCGAGTCAAGTTTTCCTAGAGGAGCGTTTGGATGGGGCTACTGGCTCGTCAATCGTTGTGACCATGGAAGGGACCCGTC
CGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCAACCATGTTTGGAAATGCTAAACGTACGACGACTGGACTTGATTTC
AATCGTGCAAGTCTGATTATGGCTGTTTTGGAAAAACGAGCAGGGTTTCTCTTGCAAAACCAGGATGCCTATCTCAAATC
TGCTGGTGGTGTAAAATTGGATGAGCCTGCCATTGACTTGGCTGTTGCAGTGGCTATTGCCTCTAGTTACAAGGACAAGC
CTACCAATCCTCAGGAATGTTTTGTGGGTGAACTGGGCTTGACCGGAGAAATTCGGCGCGTGAATCGCATCGAACAACGC
ATCAATGAAGCGGAAAAATTGGGCTTTACCAAGATTTATGTACCCAAGAATTCCTTGACAGGAATCACTCCACCCAAGGA
AATTGAAGTCATTGGTGTGACGACTATTCAGGAAGTTTTGAAAAAGGTCTTTGCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(352-417)

AAA domain (AAA_25)

(56-210)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

98.427

100

0.984
  radA Streptococcus mitis SK321

98.202

100

0.982
  radA Streptococcus pneumoniae Rx1

98.202

100

0.982
  radA Streptococcus pneumoniae D39

98.202

100

0.982
  radA Streptococcus pneumoniae R6

98.202

100

0.982
  radA Streptococcus pneumoniae TIGR4

98.202

100

0.982
  radA Bacillus subtilis subsp. subtilis str. 168

62.921

100

0.629

Multiple sequence alignment