Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CO686_RS05350 Genome accession   NZ_CP023507
Coordinates   1068032..1069834 (-) Length   600 a.a.
NCBI ID   WP_033629880.1    Uniprot ID   A0AAW7W4M8
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1063032..1074834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS05335 (CO686_05335) - 1064897..1066120 (-) 1224 WP_000703343.1 FtsW/RodA/SpoVE family cell cycle protein -
  CO686_RS05340 (CO686_05340) prsA 1066308..1067249 (-) 942 WP_000728082.1 peptidylprolyl isomerase PrsA -
  CO686_RS05345 (CO686_05345) - 1067317..1068030 (-) 714 WP_080702645.1 O-methyltransferase -
  CO686_RS05350 (CO686_05350) pepF 1068032..1069834 (-) 1803 WP_033629880.1 oligoendopeptidase F Regulator
  CO686_RS05355 (CO686_05355) coiA 1069853..1070809 (-) 957 WP_033629881.1 competence protein CoiA family protein Machinery gene
  CO686_RS05360 (CO686_05360) - 1070886..1072034 (-) 1149 WP_096753599.1 DUF1887 family protein -
  CO686_RS05365 (CO686_05365) tehB 1072212..1073072 (-) 861 WP_000413068.1 SAM-dependent methyltransferase TehB -
  CO686_RS05370 (CO686_05370) smpB 1073087..1073554 (-) 468 WP_001051742.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69827.68 Da        Isoelectric Point: 4.5731

>NTDB_id=247858 CO686_RS05350 WP_033629880.1 1068032..1069834(-) (pepF) [Streptococcus oralis strain FDAARGOS_367]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDLTEKVQTAAQYEGHLLDSADSLLEITEFSLDLERQVEKLYVYAHMKND
QDTRETKYQEYYAKAMTLYSQLEQAFSFYEPEFMEISEEQYAAFLEAQPKLQVYKHFFDKLLQKKDHVLSQREEELLAGA
GEIFGSASETFAILDNADISFPYVLDDEGNEVQLSHGTYIRLMESKNREVRRGAYEALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVDYSFTYEEALK
KAEEALAVLGDDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPQIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLRAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=247858 CO686_RS05350 WP_033629880.1 1068032..1069834(-) (pepF) [Streptococcus oralis strain FDAARGOS_367]
ATGGTATTACAACGACATGAAATAAATGAAAAAGATACATGGGATCTTTCGACAATCTACCCAACAGACCAGGCTTGGGA
AGAAGCCTTGAAAGATTTAACTGAAAAAGTACAAACAGCAGCCCAGTATGAGGGACATCTCTTGGACAGCGCAGACAGTT
TGCTTGAGATCACAGAATTCTCACTCGACTTGGAACGCCAAGTTGAAAAGCTTTATGTCTATGCGCATATGAAAAATGAC
CAGGACACGCGTGAGACCAAGTATCAAGAGTACTATGCCAAGGCAATGACCCTATACAGTCAGTTAGAACAAGCCTTTTC
ATTCTATGAACCTGAGTTTATGGAGATTAGCGAAGAGCAGTATGCGGCCTTCCTAGAAGCTCAACCAAAACTCCAAGTTT
ACAAGCACTTTTTTGACAAGCTCTTGCAAAAGAAAGACCATGTTCTTTCGCAACGTGAGGAAGAATTGCTTGCTGGAGCA
GGAGAAATCTTTGGTTCTGCTAGTGAAACCTTCGCTATTTTGGACAATGCGGATATTAGCTTCCCATACGTGCTTGATGA
CGAAGGCAATGAAGTGCAACTCTCACACGGTACTTACATCCGTTTGATGGAGTCTAAAAACCGTGAAGTGCGTCGTGGTG
CCTATGAAGCCCTTTATGCGACTTACGAGCAATTCCAACATACTTATGCTAAGACCTTGCAGACAAATGTTAAGGTGCAA
AACTACCGAGCAAAAGTTCGCAACTATAAGAGTGCTCGCCATGCAGCCCTCGCAGCAAACTTTGTTCCAGAAAGTGTCTA
TGACAATCTAGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTGCATCGTTACCTAGAACTTCGTTCTAAAATCTTAGGTA
TTTCCGACCTCAAGATGTACGATGTCTACACACCACTTTCGTCAGTAGATTATAGCTTTACCTACGAAGAAGCCTTGAAA
AAGGCAGAAGAAGCTTTGGCAGTTTTAGGTGACGACTACTTGAGCCGTGTTAAACGTGCCTTCAGTGAGCGTTGGATTGA
TGTCTATGAAAACCAAGGCAAGCGTTCTGGTGCCTACTCTGGTGGTTCTTACGATACCAATGCCTTTATGCTTCTCAACT
GGCAGGACAATCTAGACAATCTCTTTACCCTTGTCCATGAAACAGGTCACAGTATGCACTCAAGCTATACTCGTGAAACC
CAGCCTTATGTTTACGGGGATTACTCTATCTTCTTGGCGGAGATTGCCTCAACCACAAACGAAAATATCTTGACAGAGAA
ATTGTTGGAAGAAGTAGAAGACGATGCAACTCGCTTTGCTATTCTCAATAACTTCCTAGACGGTTTCCGTGGAACAGTCT
TCCGTCAAACTCAATTCGCTGAGTTTGAACACGCCATCCACCAAGCAGACCAAAATGGAGAAGTCTTGACAAGTGATTTC
CTCAATAAGCTCTACGCTGACCTGAACCAAGAGTACTATGGACTCAGCAAGGAAGACAATCCTCAGATCCAATACGAGTG
GGCACGCATTCCACATTTCTACTATAACTACTATGTTTATCAGTATTCAACTGGTTTTGCAGCTGCTTCAGCCTTGGCTG
AGAAGATTGTCCATGGTAGTCAAGAAGACCGTGACCGCTATATAGACTACCTCAGGGCAGGTAAGTCAGACTATCCGCTC
AATGTCATGAGAAAAGCGGGAGTGGATATGGAAAAAGAAGACTATCTCAACGATGCCTTTGCAGTCTTTGAACGCCGCTT
GAACGAGTTTGAAGCCCTTGTTGAAAAATTGGGACTAGCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.114

99.333

0.667

Multiple sequence alignment