Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   CO686_RS00935 Genome accession   NZ_CP023507
Coordinates   179513..180226 (-) Length   237 a.a.
NCBI ID   WP_049550445.1    Uniprot ID   -
Organism   Streptococcus oralis strain FDAARGOS_367     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 174513..185226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO686_RS00935 (CO686_00935) treR 179513..180226 (-) 714 WP_049550445.1 trehalose operon repressor Regulator
  CO686_RS00940 (CO686_00940) treP 180411..182378 (+) 1968 WP_049550444.1 PTS system trehalose-specific EIIBC component -
  CO686_RS00945 (CO686_00945) treC 182442..184073 (+) 1632 WP_049550443.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27752.85 Da        Isoelectric Point: 6.9946

>NTDB_id=247843 CO686_RS00935 WP_049550445.1 179513..180226(-) (treR) [Streptococcus oralis strain FDAARGOS_367]
MKKYQQLFKQIQKTIQNETYAVGDFLPSEHELMDQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVQELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELVPNLTRQIAEQSIY
SYIEDDLKLLIDYAQKEITIDHTSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFHFVDFAKRHPK

Nucleotide


Download         Length: 714 bp        

>NTDB_id=247843 CO686_RS00935 WP_049550445.1 179513..180226(-) (treR) [Streptococcus oralis strain FDAARGOS_367]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAAAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTCCC
CAGTGAGCACGAACTCATGGATCAGTATCAGGTGAGCCGTGACACCGTCCGAAAAGCTCTGTCCCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGGGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACGGTAAATTTCCCTGTCTCTAACCTAACC
AGCTACCAAGAACTGGTTCAGGAACTTGGGCTGCGCTCGAAAACCAATGTCGTCAGTCTTGACAAGATCATTATCGATAA
AAAGTCCTCACTGATAACCGGCTTTCCAGAGTTTCGGATGGTGTGGAAGGTAGTCCGCCAGCGTGTGGTGGATGATTTGG
TATCGGTTCTAGATACGGACTATCTGGATATGGAACTGGTCCCAAATCTCACTCGCCAAATCGCTGAGCAGTCTATCTAC
TCGTATATAGAGGACGACCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACACTAGCGATCGAGA
CAAGATTCTCATGGATATTGGCAAAGACCCTTATGTCGTTTCAATCAAGTCAAAAGTCTATCTCCAAGACGGGCGCCAGT
TCCAATTCACCGAAAGTCGCCATAAATTAGAAAAATTTCACTTTGTTGACTTTGCCAAAAGACATCCGAAATAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(89-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

58.298

99.156

0.578

Multiple sequence alignment