Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AOY63_RS09090 Genome accession   NZ_CP028764
Coordinates   1963559..1964986 (-) Length   475 a.a.
NCBI ID   WP_000980626.1    Uniprot ID   -
Organism   Escherichia coli strain A10     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1958559..1969986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY63_RS09055 (AOY63_09630) hisL 1959139..1959189 (-) 51 WP_001364200.1 his operon leader peptide -
  AOY63_RS09060 (AOY63_09635) yefM 1959473..1959724 (+) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  AOY63_RS09065 (AOY63_09640) yoeB 1959721..1959975 (+) 255 WP_000767820.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  AOY63_RS09070 (AOY63_09645) yeeZ 1960058..1960882 (+) 825 WP_000754757.1 SDR family oxidoreductase -
  AOY63_RS09075 (AOY63_09650) yeeY 1960928..1961858 (+) 931 Protein_1787 LysR substrate-binding domain-containing protein -
  AOY63_RS09080 (AOY63_09655) yoeI 1962074..1962136 (+) 63 WP_010723108.1 membrane protein YoeI -
  AOY63_RS09085 (AOY63_09660) plaP 1962126..1963484 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  AOY63_RS09090 (AOY63_09665) sbcB 1963559..1964986 (-) 1428 WP_000980626.1 exodeoxyribonuclease I Machinery gene
  AOY63_RS09095 (AOY63_09670) dacD 1965195..1966361 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  AOY63_RS09100 (AOY63_09675) sbmC 1966480..1966953 (+) 474 WP_001105380.1 DNA gyrase inhibitor SbmC -
  AOY63_RS09105 (AOY63_09680) yeeA 1967152..1968210 (+) 1059 WP_001200891.1 FUSC family protein -
  AOY63_RS09110 (AOY63_09685) tmaR 1968382..1968711 (+) 330 WP_000450409.1 DUF496 family protein -
  AOY63_RS09115 (AOY63_09690) - 1968812..1969255 (-) 444 WP_201477115.1 EutP/PduV family microcompartment system protein -
  AOY63_RS09120 (AOY63_09695) pduU 1969260..1969610 (-) 351 WP_000211397.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54532.81 Da        Isoelectric Point: 5.4700

>NTDB_id=247829 AOY63_RS09090 WP_000980626.1 1963559..1964986(-) (sbcB) [Escherichia coli strain A10]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATISMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVTLLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=247829 AOY63_RS09090 WP_000980626.1 1963559..1964986(-) (sbcB) [Escherichia coli strain A10]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCACACGATGCGATGGCTGATGT
GTACGCCACTATTTCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTAGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCT
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAT
ATGCCGATGACAAAGAGAAAGTGACGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583