Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CO701_RS14080 Genome accession   NZ_CP023504
Coordinates   2778253..2778867 (-) Length   204 a.a.
NCBI ID   WP_096757639.1    Uniprot ID   -
Organism   Citrobacter werkmanii strain FDAARGOS_364     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2773253..2783867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO701_RS14065 (CO701_14065) helD 2773477..2775531 (-) 2055 WP_096757637.1 DNA helicase IV -
  CO701_RS14070 (CO701_14070) - 2775657..2776103 (+) 447 WP_096757638.1 YccF domain-containing protein -
  CO701_RS14075 (CO701_14075) yccS 2776122..2778275 (+) 2154 WP_096759437.1 YccS family putative transporter -
  CO701_RS14080 (CO701_14080) sxy/tfoX 2778253..2778867 (-) 615 WP_096757639.1 TfoX/Sxy family DNA transformation protein Regulator
  CO701_RS14085 (CO701_14085) sulA 2779084..2779593 (+) 510 WP_096757640.1 SOS-induced cell division inhibitor SulA -
  CO701_RS14090 (CO701_14090) ompA 2779949..2780995 (+) 1047 WP_096759438.1 porin OmpA -
  CO701_RS14095 (CO701_14095) matP 2781094..2781546 (-) 453 WP_096757641.1 macrodomain Ter protein MatP -
  CO701_RS14100 (CO701_14100) - 2781732..2783492 (+) 1761 WP_096757642.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23324.03 Da        Isoelectric Point: 9.7013

>NTDB_id=247805 CO701_RS14080 WP_096757639.1 2778253..2778867(-) (sxy/tfoX) [Citrobacter werkmanii strain FDAARGOS_364]
MKNLSYARIYKSQEYLASLGTIRYRSLFGSYSLTVGETVFAMVANGELYLRACEQSVQYCVKHSPVWLTFMKRGRPVILN
YYQVNDALWRNHPQLVSLSRYSLDAAVKEKQTRVSQHRLRELPNISFHLETLLSEAGIKDEGTLRTLGAQMCWLKLLQIN
PSLTVKILYALEGAISGIHEAALPTVRRRELVEWVSSLKPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=247805 CO701_RS14080 WP_096757639.1 2778253..2778867(-) (sxy/tfoX) [Citrobacter werkmanii strain FDAARGOS_364]
ATGAAAAATCTTTCTTATGCCAGGATCTATAAATCACAAGAATATTTGGCCTCTTTGGGTACAATTCGCTATCGATCTCT
GTTTGGTAGCTATAGCCTGACGGTGGGGGAGACGGTCTTTGCCATGGTCGCCAACGGTGAGTTATATCTTCGGGCATGCG
AGCAAAGCGTACAGTACTGTGTAAAACATTCCCCGGTCTGGTTGACGTTTATGAAACGCGGACGTCCCGTGATACTCAAC
TATTATCAAGTTAATGATGCGCTGTGGCGAAACCATCCGCAGTTGGTGTCTTTATCACGATATTCTCTGGATGCCGCAGT
TAAAGAAAAACAGACGCGTGTTTCGCAACACCGGTTACGGGAACTGCCGAACATTTCCTTTCATCTGGAGACCCTACTGA
GTGAAGCCGGGATTAAAGATGAGGGTACATTACGCACCCTGGGTGCTCAAATGTGTTGGCTAAAGCTTTTGCAAATTAAC
CCATCGCTGACAGTGAAAATTCTTTATGCGCTTGAGGGCGCAATCAGTGGGATACATGAAGCTGCACTCCCGACGGTTCG
CCGCCGGGAGTTGGTTGAGTGGGTGAGTTCACTTAAGCCTGAACCGGGTTACTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.118

100

0.691

Multiple sequence alignment