Detailed information NTG0247739

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY64_RS05185
• Genome accession: NZ_CP028763
• Coordinates: 1081751..1082743 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A11
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1076751..1087743

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY64_RS05155 (AOY64_05510)	ispD	1076810..1077520 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AOY64_RS05160 (AOY64_05515)	ispF	1077520..1078000 (+)	481	Protein_1017	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY64_RS05165 (AOY64_05520)	truD	1077997..1079047 (+)	1051	Protein_1018	tRNA pseudouridine(13) synthase TruD	-
AOY64_RS05170 (AOY64_05525)	surE	1079028..1079789 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY64_RS05175 (AOY64_05530)	pcm	1079783..1080409 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY64_RS05180 (AOY64_05535)	nlpD	1080594..1081688 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
AOY64_RS05185 (AOY64_05540)	rpoS	1081751..1082743 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY64_RS05190 (AOY64_05545)	-	1082864..1083271 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
AOY64_RS05195 (AOY64_05550)	-	1083418..1084011 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AOY64_RS05200 (AOY64_05555)	-	1084011..1085438 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AOY64_RS05205 (AOY64_05560)	-	1085449..1085685 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AOY64_RS05210 (AOY64_05565)	ygbN	1085724..1087088 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=247739 AOY64_RS05185 WP_000081550.1 1081751..1082743(+) (rpoS) [Escherichia coli strain A11]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=247739 AOY64_RS05185 WP_000081550.1 1081751..1082743(+) (rpoS) [Escherichia coli strain A11]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715