Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CO689_RS07960 Genome accession   NZ_CP023497
Coordinates   1491505..1492875 (+) Length   456 a.a.
NCBI ID   WP_061054914.1    Uniprot ID   -
Organism   Staphylococcus simulans strain FDAARGOS_383     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1486505..1497875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO689_RS07940 (CO689_07940) - 1486747..1487208 (+) 462 WP_023016300.1 CtsR family transcriptional regulator -
  CO689_RS07945 (CO689_07945) - 1487328..1487732 (+) 405 Protein_1355 UvrB/UvrC motif-containing protein -
  CO689_RS07950 (CO689_07950) - 1487736..1488740 (+) 1005 WP_002481313.1 protein arginine kinase -
  CO689_RS07955 (CO689_07955) - 1488752..1491217 (+) 2466 WP_061054915.1 ATP-dependent Clp protease ATP-binding subunit -
  CO689_RS07960 (CO689_07960) radA 1491505..1492875 (+) 1371 WP_061054914.1 DNA repair protein RadA Machinery gene
  CO689_RS07965 (CO689_07965) - 1492903..1493967 (+) 1065 WP_061054913.1 PIN/TRAM domain-containing protein -
  CO689_RS07970 (CO689_07970) gltX 1494254..1495708 (+) 1455 WP_061054912.1 glutamate--tRNA ligase -
  CO689_RS07975 (CO689_07975) cysE 1496007..1496636 (+) 630 WP_172954255.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50251.79 Da        Isoelectric Point: 7.7334

>NTDB_id=247715 CO689_RS07960 WP_061054914.1 1491505..1492875(+) (radA) [Staphylococcus simulans strain FDAARGOS_383]
MAKKKVTFECMACGYQSPKWMGKCPNCGAWNQMEEVMTQKEAPSGRGMRTREQTAKVTKLNDVQHESTPRIHTSSREFDR
VLGGGIVQGSLVLIGGDPGIGKSTLLLQICSALSQNKKVLYITGEESLNQTKLRADRLEEDSSQLNVFAETDLEVIKEAV
KQTQPDLVVVDSIQTVYHPEISSAPGSVSQVRESTQILMGIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKHSGLKGVKNPSEMFLQERSTNVAGSTIVPTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLNLLMAVLEKKESYLLQQQDAYVKVAGGVRLTEPAVDLAIIAAVASSFKDQPINGMDCFVGEVGLTGEV
RRVSRIEQRVQEAAKLGFKRVIIPKTNIGGWDFPDNIQVIGVTSVHEALNFALMKS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=247715 CO689_RS07960 WP_061054914.1 1491505..1492875(+) (radA) [Staphylococcus simulans strain FDAARGOS_383]
TTGGCAAAAAAGAAAGTGACATTTGAATGTATGGCATGTGGTTATCAATCACCGAAATGGATGGGGAAATGTCCGAATTG
TGGTGCTTGGAACCAAATGGAAGAAGTTATGACGCAAAAAGAAGCCCCAAGTGGCAGAGGGATGCGTACAAGAGAACAAA
CAGCTAAAGTAACAAAGTTAAATGATGTCCAACATGAATCTACACCGCGTATCCATACAAGTTCGAGAGAATTTGATCGT
GTCTTAGGTGGCGGTATTGTCCAAGGTTCGCTCGTGTTAATCGGTGGGGACCCTGGTATTGGTAAATCGACATTATTACT
TCAAATTTGTTCTGCGTTATCTCAAAATAAAAAAGTACTTTATATTACAGGTGAGGAATCACTGAATCAAACGAAATTGC
GAGCAGATCGTTTAGAAGAAGATTCAAGTCAATTAAACGTGTTTGCGGAAACAGATTTAGAAGTTATTAAAGAAGCTGTT
AAACAAACACAACCAGACTTAGTGGTAGTAGACTCGATTCAAACAGTGTATCATCCGGAAATCAGTTCAGCGCCTGGTTC
TGTCTCACAAGTACGAGAAAGTACGCAAATTCTGATGGGGATTGCGAAACAAATGAATATCGCAACCTTTATCGTCGGTC
ATGTGACGAAAGAAGGACAAATTGCAGGTCCACGTTTATTAGAACATATGGTAGATACGGTACTATATTTCGAAGGGGAC
GAACACCATGCATATAGAATTCTGCGTGCAGTGAAGAACCGTTTCGGTTCAACGAATGAAATGGGAATCTTCGAAATGAA
ACATAGCGGTTTGAAAGGAGTTAAGAACCCTTCAGAGATGTTCTTACAAGAACGTTCAACGAATGTAGCTGGCTCTACAA
TTGTTCCGACAATGGAAGGTACACGTCCTTTATTAATTGAAGTGCAAGCATTAGTGACACCGACAACATTTAATAACCCA
AGACGTATGGCGACTGGTATCGATCATAACCGCTTAAATTTATTAATGGCAGTGTTAGAGAAGAAAGAAAGTTACTTGCT
GCAACAACAAGATGCTTATGTCAAAGTTGCAGGCGGCGTGCGTTTAACAGAACCAGCTGTTGATTTAGCAATTATCGCAG
CGGTTGCTTCTAGTTTTAAAGACCAACCTATCAACGGCATGGATTGTTTCGTCGGTGAAGTAGGTCTGACAGGAGAAGTA
CGACGTGTCTCACGTATTGAACAACGTGTTCAAGAAGCAGCGAAATTAGGTTTCAAACGTGTGATTATTCCTAAAACCAA
TATAGGAGGTTGGGACTTCCCAGATAATATTCAAGTTATCGGTGTAACCAGTGTGCATGAAGCACTGAACTTTGCATTGA
TGAAAAGCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

AAA domain (AAA_25)

(69-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.646

100

0.658
  radA Streptococcus pneumoniae Rx1

60.579

98.465

0.596
  radA Streptococcus pneumoniae D39

60.579

98.465

0.596
  radA Streptococcus pneumoniae R6

60.579

98.465

0.596
  radA Streptococcus pneumoniae TIGR4

60.579

98.465

0.596
  radA Streptococcus mitis NCTC 12261

60.579

98.465

0.596
  radA Streptococcus mitis SK321

60.579

98.465

0.596

Multiple sequence alignment