Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AOY65_RS06130 Genome accession   NZ_CP028762
Coordinates   1258104..1258619 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain A12     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1253104..1263619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY65_RS06085 (AOY65_06550) csrA 1253556..1253741 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AOY65_RS06115 (AOY65_06580) yqaB 1255334..1255900 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AOY65_RS06120 (AOY65_06585) yqaA 1255897..1256325 (+) 429 WP_001287457.1 YqaA family protein -
  AOY65_RS06125 (AOY65_06590) gshA 1256398..1257954 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  AOY65_RS06130 (AOY65_06595) luxS 1258104..1258619 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AOY65_RS06135 (AOY65_06600) emrB 1258683..1260221 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AOY65_RS06140 (AOY65_06605) emrA 1260238..1261410 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AOY65_RS06145 (AOY65_06610) emrR 1261537..1262067 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AOY65_RS06150 (AOY65_06615) ygaH 1262158..1262493 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AOY65_RS06155 (AOY65_06620) ygaZ 1262483..1263220 (-) 738 WP_000445660.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=247663 AOY65_RS06130 WP_001130211.1 1258104..1258619(+) (luxS) [Escherichia coli strain A12]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=247663 AOY65_RS06130 WP_001130211.1 1258104..1258619(+) (luxS) [Escherichia coli strain A12]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731