Detailed information NTG0247660

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: AOY65_RS05835
• Genome accession: NZ_CP028762
• Coordinates: 1201991..1202983 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain A12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1196991..1207983

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOY65_RS05805 (AOY65_06270)	ispD	1197052..1197762 (+)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
AOY65_RS05810 (AOY65_06275)	ispF	1197762..1198241 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
AOY65_RS05815 (AOY65_06280)	truD	1198238..1199287 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
AOY65_RS05820 (AOY65_06285)	surE	1199268..1200029 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
AOY65_RS05825 (AOY65_06290)	pcm	1200023..1200649 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
AOY65_RS05830 (AOY65_06295)	nlpD	1200834..1201928 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
AOY65_RS05835 (AOY65_06300)	rpoS	1201991..1202983 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
AOY65_RS05840 (AOY65_06305)	-	1203104..1203511 (-)	408	WP_001208070.1	MarR family transcriptional regulator	-
AOY65_RS05845 (AOY65_06310)	-	1203658..1204251 (+)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
AOY65_RS05850 (AOY65_06315)	-	1204251..1205678 (+)	1428	WP_087906670.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
AOY65_RS05855 (AOY65_06320)	-	1205689..1205925 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
AOY65_RS05860 (AOY65_06325)	ygbN	1205964..1207328 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=247660 AOY65_RS05835 WP_000081550.1 1201991..1202983(+) (rpoS) [Escherichia coli strain A12]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=247660 AOY65_RS05835 WP_000081550.1 1201991..1202983(+) (rpoS) [Escherichia coli strain A12]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715