Detailed information NTG0247628

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC71_RS13670
• Genome accession: NZ_CP023485
• Coordinates: 2717582..2718571 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain FORC_071
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2712582..2723571

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC71_RS13655 (FORC71_2460)	recA	2713130..2714173 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
FORC71_RS13660 (FORC71_2461)	pncC	2714374..2714856 (-)	483	WP_025606302.1	nicotinamide-nucleotide amidase	-
FORC71_RS13665 (FORC71_2462)	mutS	2714941..2717502 (+)	2562	WP_065779641.1	DNA mismatch repair protein MutS	-
FORC71_RS13670 (FORC71_2463)	rpoS	2717582..2718571 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
FORC71_RS13675 (FORC71_2464)	-	2718652..2719575 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
FORC71_RS13680 (FORC71_2465)	-	2719590..2720216 (-)	627	WP_029816278.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC71_RS13685 (FORC71_2466)	surE	2720216..2720992 (-)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
FORC71_RS13690 (FORC71_2467)	truD	2720992..2722035 (-)	1044	WP_021450029.1	tRNA pseudouridine(13) synthase TruD	-
FORC71_RS13695 (FORC71_2468)	ispF	2722082..2722558 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC71_RS13700 (FORC71_2469)	ispD	2722576..2723280 (-)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC71_RS13705 (FORC71_2470)	ftsB	2723282..2723563 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=247628 FORC71_RS13670 WP_005478537.1 2717582..2718571(-) (rpoS) [Vibrio parahaemolyticus strain FORC_071]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=247628 FORC71_RS13670 WP_005478537.1 2717582..2718571(-) (rpoS) [Vibrio parahaemolyticus strain FORC_071]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851