Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FORC71_RS06670 Genome accession   NZ_CP023485
Coordinates   1366967..1368388 (-) Length   473 a.a.
NCBI ID   WP_029798016.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_071     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1361967..1373388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC71_RS06645 (FORC71_1204) - 1362531..1363181 (+) 651 WP_120416603.1 thiopurine S-methyltransferase -
  FORC71_RS06650 (FORC71_1205) purT 1363283..1364458 (-) 1176 WP_023584297.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  FORC71_RS06655 (FORC71_1206) cdd 1364606..1365493 (-) 888 WP_020840481.1 cytidine deaminase -
  FORC71_RS06660 (FORC71_1207) - 1365858..1366535 (-) 678 WP_020840482.1 LrgB family protein -
  FORC71_RS06665 (FORC71_1208) - 1366537..1366911 (-) 375 WP_005455074.1 CidA/LrgA family protein -
  FORC71_RS06670 (FORC71_1209) sbcB 1366967..1368388 (-) 1422 WP_029798016.1 exodeoxyribonuclease I Machinery gene
  FORC71_RS06675 (FORC71_1210) - 1368544..1369917 (-) 1374 WP_005486634.1 L-cystine transporter -
  FORC71_RS06680 (FORC71_1211) - 1370110..1370805 (-) 696 WP_017448627.1 NAD(P)H-binding protein -
  FORC71_RS06685 (FORC71_1212) cobT 1371489..1372532 (+) 1044 WP_021453099.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  FORC71_RS06690 (FORC71_1213) - 1372577..1373329 (+) 753 WP_031809668.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54643.02 Da        Isoelectric Point: 5.0409

>NTDB_id=247616 FORC71_RS06670 WP_029798016.1 1366967..1368388(-) (sbcB) [Vibrio parahaemolyticus strain FORC_071]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAVLITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGNLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=247616 FORC71_RS06670 WP_029798016.1 1366967..1368388(-) (sbcB) [Vibrio parahaemolyticus strain FORC_071]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTACCTGCTG
ATTATCTACCGTCTCCGGAAGCTGTATTAATTACCGGCATTACGCCGCAAAAGGCGATGCAAGAGGGTCTATCCGAGCCT
GAGTTTATTGCTAAGATTCACGCCGAGTTATCGAAGCCAAAAACCACCAGCCTAGGCTATAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCAGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAGCTGTTTGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCAACCTACTACCCG
TACCAGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCGCCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATCTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

100

0.795

Multiple sequence alignment