Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AOY66_RS16575 Genome accession   NZ_CP028761
Coordinates   3457437..3457952 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain A13     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3452437..3462952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY66_RS16555 (AOY66_17515) emrA 3452585..3453757 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AOY66_RS16560 (AOY66_17520) emrB 3453774..3455312 (+) 1539 WP_001337983.1 multidrug efflux MFS transporter permease subunit EmrB -
  AOY66_RS16565 (AOY66_17525) - 3455570..3456277 (+) 708 WP_001097130.1 RNA ligase family protein -
  AOY66_RS16570 (AOY66_17530) - 3456274..3457386 (+) 1113 WP_000638140.1 ATP-binding protein -
  AOY66_RS16575 (AOY66_17535) luxS 3457437..3457952 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  AOY66_RS16580 (AOY66_17540) gshA 3458102..3459658 (-) 1557 WP_201475078.1 glutamate--cysteine ligase -
  AOY66_RS16585 (AOY66_17545) yqaA 3459731..3460159 (-) 429 WP_001287462.1 YqaA family protein -
  AOY66_RS16590 (AOY66_17550) yqaB 3460156..3460722 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AOY66_RS16625 (AOY66_17585) csrA 3462050..3462235 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=247608 AOY66_RS16575 WP_001130208.1 3457437..3457952(-) (luxS) [Escherichia coli strain A13]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=247608 AOY66_RS16575 WP_001130208.1 3457437..3457952(-) (luxS) [Escherichia coli strain A13]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737