Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   COP00_RS22895 Genome accession   NZ_CP023481
Coordinates   4369231..4371048 (+) Length   605 a.a.
NCBI ID   WP_281503742.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 4364231..4376048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS22870 (COP00_22870) - 4364990..4365568 (+) 579 WP_046131213.1 GNAT family N-acetyltransferase -
  COP00_RS22875 (COP00_22875) spxA 4365745..4366140 (+) 396 WP_046131212.1 transcriptional regulator SpxA -
  COP00_RS22880 (COP00_22880) - 4366189..4366851 (-) 663 WP_048355060.1 TerC family protein -
  COP00_RS24860 - 4367003..4367128 (+) 126 Protein_4501 hypothetical protein -
  COP00_RS22885 (COP00_22885) mecA 4367110..4367748 (+) 639 WP_048355059.1 adaptor protein MecA Regulator
  COP00_RS22890 (COP00_22890) - 4367870..4369018 (+) 1149 WP_096892088.1 competence protein CoiA -
  COP00_RS22895 (COP00_22895) pepF 4369231..4371048 (+) 1818 WP_281503742.1 oligoendopeptidase F Regulator
  COP00_RS25160 (COP00_22900) - 4371101..4371268 (-) 168 WP_046131207.1 hypothetical protein -
  COP00_RS22910 (COP00_22910) - 4371677..4372510 (-) 834 WP_411801466.1 ClpXP adapter SpxH family protein -
  COP00_RS22915 (COP00_22915) - 4372567..4372965 (-) 399 WP_046131205.1 thiol management oxidoreductase -
  COP00_RS22920 (COP00_22920) - 4373250..4373915 (-) 666 WP_048355690.1 lytic transglycosylase domain-containing protein -
  COP00_RS22925 (COP00_22925) - 4373928..4374500 (-) 573 WP_046131203.1 CYTH domain-containing protein -
  COP00_RS22930 (COP00_22930) - 4374629..4374994 (+) 366 WP_048355691.1 hypothetical protein -
  COP00_RS22935 (COP00_22935) - 4375025..4375660 (+) 636 WP_046131201.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69942.49 Da        Isoelectric Point: 4.7538

>NTDB_id=247546 COP00_RS22895 WP_281503742.1 4369231..4371048(+) (pepF) [Bacillus glycinifermentans strain KBN06P03352]
MAEENQTKKLPARDEVKQEDTWRLEDIFSSDEAWNKEFQAVKELLPKLSEFKGKLGHSADDLYEALTYQDKVMERLGKLY
TYAHMRYDQDTGNSFYQGLNDKASNLYTQAASATAYMVPEILSIQEDKLQQFLLEKEELKLYSHALEEINKERPHVLSEE
EEGLLAEASDVLSSPSTTFGMLNNADMEFPEITDEDGEKRQLTHGNYITFLESENRDVRREAFKAVYDTYGRFKNTLAST
LSGAVKKDNFYAKVKHYKSAREAALSRNSIPEEVYDNLVETINKYLPLLHRYVELRKQVLELDEVHMYDLYTPLVKDAGM
KVTYEQAKDYMLKGLAPLGEEYSSILKEGLNNRWVDVYENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGDYLLNTVDDEKQRLYILNHMLEGFKGTVFRQTMFAEFEHAIHVKAQ
EGEPLTPELLTSIYYDLNKKYFGENIEIDKEIGLEWARIPHFYYNYYVYQYATGYSAAQALSQQILKEGKPAVDRYIEFL
KAGSSDYPIEVLKKAGVDMTSSEPIEAACKKFEEQLNEMEELLLK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=247546 COP00_RS22895 WP_281503742.1 4369231..4371048(+) (pepF) [Bacillus glycinifermentans strain KBN06P03352]
GTGGCTGAAGAAAATCAAACGAAAAAACTGCCTGCAAGAGATGAGGTGAAGCAAGAAGACACGTGGAGACTTGAGGATAT
CTTTTCATCCGATGAAGCTTGGAACAAGGAATTTCAAGCGGTCAAAGAGCTGCTGCCTAAGCTTTCCGAATTCAAGGGAA
AGCTCGGTCATTCCGCCGACGATCTATATGAAGCATTGACATATCAGGACAAAGTCATGGAAAGGCTCGGCAAGCTGTAT
ACTTACGCCCATATGCGCTATGATCAGGACACCGGCAATTCGTTTTATCAAGGGTTAAATGACAAAGCGTCCAACCTTTA
TACACAGGCTGCCAGTGCGACGGCCTACATGGTGCCGGAAATTTTATCGATACAGGAGGATAAGCTCCAGCAGTTCCTTT
TGGAAAAAGAGGAACTGAAGCTCTACTCGCATGCGCTTGAAGAAATCAACAAAGAACGGCCTCATGTGCTGAGCGAAGAG
GAAGAAGGGCTGCTTGCCGAGGCATCGGATGTTCTGTCATCGCCGTCCACAACATTCGGCATGCTCAATAACGCCGATAT
GGAATTTCCGGAAATTACCGATGAAGACGGAGAAAAGCGCCAGCTGACTCACGGGAACTACATCACCTTTTTGGAAAGCG
AGAACCGCGACGTCCGCCGTGAAGCTTTCAAGGCGGTATATGATACGTACGGCCGTTTTAAAAACACGCTTGCATCGACT
CTCAGCGGCGCTGTCAAAAAAGATAATTTTTATGCGAAGGTAAAGCACTATAAATCGGCGAGAGAAGCTGCGCTGTCGCG
CAACAGCATTCCGGAAGAGGTCTATGATAATCTCGTCGAAACGATTAATAAATACTTGCCGCTTCTTCACCGCTATGTGG
AGCTCAGAAAACAAGTGCTCGAACTGGATGAAGTTCACATGTATGACCTGTACACGCCGCTTGTAAAAGATGCCGGCATG
AAAGTTACGTATGAACAAGCGAAAGATTACATGCTGAAAGGGCTCGCTCCTTTAGGGGAGGAATACTCGTCCATCCTGAA
GGAAGGCTTGAACAACCGCTGGGTCGATGTTTACGAAAACAAAGGAAAGCGGAGCGGGGCTTACTCATCAGGAACATACG
GAACAAATCCGTACATTTTGATGAACTGGCAGGACAACGTCAACAACCTGTTTACGCTTGTCCATGAATTCGGCCATTCC
GTCCACAGTTATTATACGAGAAAGCATCAGCCGTATCCGTACGGGAACTACAGCATTTTCGTCGCTGAAGTCGCATCAAC
GACAAATGAAGCCCTTTTAGGGGACTACCTGCTGAACACAGTCGACGACGAAAAGCAGCGGCTGTATATTTTAAACCACA
TGCTTGAAGGCTTTAAAGGAACAGTTTTCAGACAGACGATGTTCGCCGAATTCGAACATGCGATTCATGTCAAAGCCCAG
GAAGGCGAACCGCTGACTCCTGAGCTGCTGACAAGCATCTATTACGATTTGAACAAAAAGTACTTCGGAGAAAACATTGA
AATCGATAAAGAAATCGGTCTTGAATGGGCAAGGATTCCTCATTTCTACTACAATTATTACGTATATCAATACGCGACAG
GCTACAGCGCCGCACAGGCCCTGAGCCAGCAGATTTTAAAAGAAGGGAAGCCGGCTGTTGACCGCTATATCGAATTCTTA
AAAGCCGGAAGCTCCGATTATCCGATTGAAGTACTGAAAAAAGCGGGTGTCGACATGACATCCTCAGAACCGATTGAAGC
TGCATGCAAGAAGTTTGAAGAGCAGCTGAATGAAATGGAAGAGCTTCTCTTGAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-589)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.096

98.017

0.501

Multiple sequence alignment