Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   COP00_RS22345 Genome accession   NZ_CP023481
Coordinates   4256953..4257534 (+) Length   193 a.a.
NCBI ID   WP_048355531.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4251953..4262534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS22325 (COP00_22325) - 4252456..4253796 (-) 1341 WP_411801467.1 globin-coupled sensor protein -
  COP00_RS22330 (COP00_22330) - 4253853..4255382 (-) 1530 WP_048355528.1 FAD-dependent oxidoreductase -
  COP00_RS22335 (COP00_22335) - 4255518..4256375 (+) 858 WP_048355529.1 SDR family oxidoreductase -
  COP00_RS22340 (COP00_22340) - 4256448..4256681 (-) 234 WP_048355530.1 IDEAL domain-containing protein -
  COP00_RS22345 (COP00_22345) comK 4256953..4257534 (+) 582 WP_048355531.1 competence protein ComK Regulator
  COP00_RS22350 (COP00_22350) - 4257528..4257893 (-) 366 WP_048355532.1 hypothetical protein -
  COP00_RS22360 (COP00_22360) - 4258125..4258736 (+) 612 WP_046131310.1 TVP38/TMEM64 family protein -
  COP00_RS22365 (COP00_22365) lepB 4258749..4259264 (+) 516 WP_057957614.1 signal peptidase I -
  COP00_RS22370 (COP00_22370) - 4259322..4260929 (-) 1608 WP_096892078.1 S8 family peptidase -
  COP00_RS25885 - 4261251..4261382 (+) 132 WP_269082044.1 hypothetical protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22452.42 Da        Isoelectric Point: 8.8814

>NTDB_id=247537 COP00_RS22345 WP_048355531.1 4256953..4257534(+) (comK) [Bacillus glycinifermentans strain KBN06P03352]
MSNTEDLTRDSYEVNSSTMAVLPLDDGKTPASKVLETDRTFRVNMRPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPP
IMVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFRAAKYDNTFVTFVNGESLELPVSSASFENQVYRTAWLRTKFLDRIEG
NAAPKKQEFMLYPKEDQNQLIYEFILRELRKRY

Nucleotide


Download         Length: 582 bp        

>NTDB_id=247537 COP00_RS22345 WP_048355531.1 4256953..4257534(+) (comK) [Bacillus glycinifermentans strain KBN06P03352]
ATGAGCAATACCGAAGATTTGACAAGAGATTCTTATGAAGTAAACAGTTCGACAATGGCCGTTCTTCCTCTTGATGATGG
AAAAACGCCCGCCTCAAAAGTGCTTGAAACCGACAGGACATTTCGGGTCAATATGAGACCTTTTCAAATCATAGAGAGAA
GCTGCCGCTATTTCGGTTCAAGCTATGCAGGGAGAAAGGCCGGCACGTACGAAGTCATTAAAGTTTCCCATAAGCCGCCG
ATCATGGTGGATCATTCAAACAATATTTTTCTTTTTCCCACATTCTCCTCTACAAGGCCTCAATGCGGGTGGCTTTCCCA
TGCGCATGTTCATGAATTCCGTGCGGCTAAGTATGACAATACGTTCGTTACGTTCGTAAACGGCGAATCGCTGGAGCTGC
CGGTGTCCAGCGCGTCTTTCGAAAATCAGGTTTACCGCACGGCATGGCTGAGAACGAAATTTCTCGACCGGATTGAAGGG
AACGCCGCGCCGAAAAAACAGGAATTTATGCTGTATCCGAAGGAGGATCAGAACCAGCTGATCTATGAATTCATCCTCAG
GGAGCTGAGAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

67.526

100

0.679

Multiple sequence alignment