Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   COP00_RS18585 Genome accession   NZ_CP023481
Coordinates   3537632..3538585 (+) Length   317 a.a.
NCBI ID   WP_048405893.1    Uniprot ID   A0A0J6F1V9
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3532632..3543585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS18570 (COP00_18570) - 3532709..3534132 (+) 1424 Protein_3665 ATP-binding protein -
  COP00_RS18575 (COP00_18575) - 3534171..3535889 (-) 1719 WP_048355405.1 methyl-accepting chemotaxis protein -
  COP00_RS18580 (COP00_18580) - 3536001..3537362 (-) 1362 WP_048355404.1 aspartate kinase -
  COP00_RS18585 (COP00_18585) ceuB 3537632..3538585 (+) 954 WP_048405893.1 ABC transporter permease Machinery gene
  COP00_RS18590 (COP00_18590) - 3538575..3539519 (+) 945 WP_057957404.1 iron chelate uptake ABC transporter family permease subunit -
  COP00_RS18595 (COP00_18595) - 3539519..3540277 (+) 759 WP_048355402.1 ABC transporter ATP-binding protein -
  COP00_RS18600 (COP00_18600) - 3540297..3541238 (+) 942 WP_048355443.1 siderophore ABC transporter substrate-binding protein -
  COP00_RS18605 (COP00_18605) - 3541313..3542728 (-) 1416 WP_048355401.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35059.33 Da        Isoelectric Point: 9.7913

>NTDB_id=247531 COP00_RS18585 WP_048405893.1 3537632..3538585(+) (ceuB) [Bacillus glycinifermentans strain KBN06P03352]
MKLRYLLLLLIILCFSSIFIGVKQLSPLDLFRLNEDDIQTLYISRLPRMISIVLAGMSLSICGLIMQQLTRNKFVSPTTA
GTMDWARLGVIISIMLFSSAGMVVKIVFACAFSLFGSFLFLKILDSVRFKDAVFIPLVGLMLGGVVSAISTFIAYQYNLI
QNVNAWFEGNFSLVMKGRYELLYLSIPLVIIAYLFANKFTVAGMGESFSVNLGLNYQRVINIGLIIVSVISSVVILTVGT
LPFLGLIIPNIVSIYRGDHLKNSLPHTAVLGAVFVLFCDILGRLVIYPYEISVGLMVGIIGSGVFLYLLLRRKAYGF

Nucleotide


Download         Length: 954 bp        

>NTDB_id=247531 COP00_RS18585 WP_048405893.1 3537632..3538585(+) (ceuB) [Bacillus glycinifermentans strain KBN06P03352]
ATGAAATTGCGGTATTTACTGCTTCTGCTCATCATTCTTTGTTTCAGTTCAATTTTTATCGGCGTCAAACAACTGTCACC
CCTTGATCTATTCAGGTTGAACGAGGATGACATTCAGACGCTGTACATAAGCCGGCTTCCGCGAATGATCAGCATCGTGC
TTGCGGGAATGAGCCTGAGCATCTGCGGGCTGATTATGCAGCAGCTGACGCGCAATAAATTCGTCTCGCCGACGACGGCC
GGGACGATGGATTGGGCAAGGCTCGGCGTCATCATTTCGATTATGCTGTTTTCTTCAGCGGGCATGGTTGTAAAGATTGT
GTTTGCCTGTGCTTTTTCGCTGTTCGGCAGCTTTTTGTTTCTTAAGATTTTGGACAGCGTCAGATTTAAGGACGCGGTGT
TTATTCCGCTCGTCGGCTTGATGCTTGGAGGCGTTGTCAGCGCCATTTCCACGTTCATAGCGTATCAGTACAACCTGATT
CAAAACGTCAATGCGTGGTTTGAGGGGAATTTCTCGCTTGTCATGAAAGGAAGGTATGAGCTGTTATATTTGAGCATTCC
GCTCGTCATCATCGCCTATCTGTTTGCCAATAAATTTACGGTGGCCGGGATGGGCGAGAGCTTCTCCGTCAATCTGGGGC
TGAATTATCAGCGGGTGATCAACATCGGCCTGATCATTGTTTCGGTCATCTCGTCGGTCGTCATTTTGACGGTCGGGACG
CTTCCTTTCCTCGGACTGATCATTCCGAATATCGTTTCGATTTATCGCGGAGACCATTTGAAAAACAGCCTGCCTCACAC
GGCGGTTCTAGGCGCCGTCTTTGTCCTGTTTTGTGACATATTGGGCCGGCTGGTCATTTATCCTTATGAAATCTCGGTCG
GCCTGATGGTCGGCATCATCGGAAGCGGCGTTTTTCTTTACTTGCTTTTAAGGAGAAAAGCCTATGGATTCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6F1V9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50.633

99.685

0.505

Multiple sequence alignment