Detailed information NTG0247526

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: COP00_RS15950
• Genome accession: NZ_CP023481
• Coordinates: 3017514..3018626 (+)
• Length: 370 a.a.
• NCBI ID: WP_048353834.1
• Uniprot ID: A0A0T6BKF2
• Organism: Bacillus glycinifermentans strain KBN06P03352
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3012514..3023626

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
COP00_RS15925 (COP00_15925)	rnpA	3013263..3013622 (-)	360	WP_048406245.1	ribonuclease P protein component	-
COP00_RS15930 (COP00_15930)	rpmH	3013708..3013842 (-)	135	WP_082094032.1	50S ribosomal protein L34	-
COP00_RS15935 (COP00_15935)	dnaA	3014475..3015818 (+)	1344	WP_048406804.1	chromosomal replication initiator protein DnaA	-
COP00_RS15940 (COP00_15940)	dnaN	3015987..3017123 (+)	1137	WP_048353836.1	DNA polymerase III subunit beta	-
COP00_RS15945 (COP00_15945)	yaaA	3017283..3017498 (+)	216	WP_048353835.1	S4 domain-containing protein YaaA	-
COP00_RS15950 (COP00_15950)	recF	3017514..3018626 (+)	1113	WP_048353834.1	DNA replication/repair protein RecF	Machinery gene
COP00_RS15955 (COP00_15955)	remB	3018644..3018886 (+)	243	WP_048353833.1	extracellular matrix regulator RemB	-
COP00_RS15960 (COP00_15960)	gyrB	3018934..3020862 (+)	1929	WP_048353832.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
COP00_RS15965 (COP00_15965)	gyrA	3021038..3023497 (+)	2460	WP_048353831.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42325.21 Da
• Isoelectric Point: 6.7865

>NTDB_id=247526 COP00_RS15950 WP_048353834.1 3017514..3018626(+) (recF) [Bacillus glycinifermentans strain KBN06P03352]
MYIQNLTLSSYRNYEHVELEFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQESFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHQTLNEAGIFRVANGALLD

Nucleotide

• Length: 1113 bp

>NTDB_id=247526 COP00_RS15950 WP_048353834.1 3017514..3018626(+) (recF) [Bacillus glycinifermentans strain KBN06P03352]
TTGTATATCCAAAATCTTACATTATCATCTTACCGCAACTATGAACACGTTGAGCTCGAATTTGAAAACAAAGTGAACGT
GATTATCGGAGAGAATGCACAAGGCAAGACAAATTTGATGGAAGCGATCTACGTGCTTGCAATGGCAAAATCTCATCGGA
CCTCTAATGACAAAGAACTCATACGATGGGATCAAGACTATGCTAAAATAGAAGGTAGGGTCATTAAAAAAAACGGTCCT
GTTCCAATCCAGCTCGTCATTTCCAAAAAAGGAAAAAAAGGAAAGGTCAATCATATTGAACAGCAGAAACTGAGCCAATA
TGTAGGCGCCGTTAACACGATCATGTTTGCTCCTGAAGATTTGAATCTTGTAAAAGGGAGTCCGCAGGTCAGGAGAAGAT
TTCTTGACATGGAAATCGGCCAAGTATCACCCGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAGCGC
AACCATTTCTTAAAGCAGCTACAAACGAGAAAACAGACAGATCAGACCATGCTTGACGTACTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAATTTGTTGATCAGCTCGAAAAATGGGCTCAGCCCATCCACTCCGGAA
TTTCGCGTGGCCTGGAAGAACTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCTGATTTGTCGAAAATG
ATCAATAGTTATCAAGAATCATTTTCTAAATTAAGAGATAAAGAAATTGAACGGGGAGTTTCTTTGTCCGGCCCTCATAG
AGACGACGTTTTGTTCTACGTCAACGGCCGGGATGTCCAAACCTACGGTTCACAAGGGCAGCAGCGGACGACTGCATTAT
CTCTTAAATTGGCGGAAATTGATTTGATTCAGGAAGAGATTGGGGAATACCCGATTTTGCTTTTGGATGATGTACTGTCA
GAGCTTGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGGCGTGTTCAAACTTTCGTGACAACGACAAGCGT
CGACGGAATTGACCATCAAACCTTAAACGAAGCAGGCATCTTTCGTGTTGCAAATGGCGCGCTATTGGACTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-346)

3D structure

• AlphaFold DB: A0A0T6BKF2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	89.702	99.73	0.895