Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   COP00_RS11905 Genome accession   NZ_CP023481
Coordinates   2210963..2211247 (-) Length   94 a.a.
NCBI ID   WP_048354936.1    Uniprot ID   A0A0J6EHE8
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2205963..2216247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS11885 (COP00_11885) smpB 2206807..2207280 (-) 474 WP_048356477.1 SsrA-binding protein -
  COP00_RS11890 (COP00_11890) rnr 2207393..2209695 (-) 2303 Protein_2370 ribonuclease R -
  COP00_RS11895 (COP00_11895) - 2209709..2210455 (-) 747 WP_048354929.1 alpha/beta hydrolase -
  COP00_RS11900 (COP00_11900) secG 2210573..2210803 (-) 231 WP_048354930.1 preprotein translocase subunit SecG -
  COP00_RS11905 (COP00_11905) abrB 2210963..2211247 (-) 285 WP_048354936.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  COP00_RS11910 (COP00_11910) - 2211277..2211462 (-) 186 WP_096892181.1 helix-turn-helix transcriptional regulator -
  COP00_RS11915 (COP00_11915) - 2211663..2212067 (+) 405 WP_048354931.1 transcriptional regulator -
  COP00_RS11920 (COP00_11920) - 2212223..2212621 (+) 399 WP_048354937.1 helix-turn-helix domain-containing protein -
  COP00_RS11925 (COP00_11925) - 2212670..2213347 (-) 678 WP_048354932.1 ABC transporter permease -
  COP00_RS11930 (COP00_11930) opuCC 2213369..2214286 (-) 918 WP_048354933.1 osmoprotectant ABC transporter substrate-binding lipoprotein OpuCC -
  COP00_RS11935 (COP00_11935) - 2214300..2214953 (-) 654 WP_048354934.1 ABC transporter permease -
  COP00_RS11940 (COP00_11940) - 2214966..2216108 (-) 1143 WP_048354935.1 betaine/proline/choline family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10469.31 Da        Isoelectric Point: 6.3369

>NTDB_id=247513 COP00_RS11905 WP_048354936.1 2210963..2211247(-) (abrB) [Bacillus glycinifermentans strain KBN06P03352]
MKNTGIVRRIDELGRVVLPVEMRKVLNIEEKDPLEIYSDGDSIILTKYAANMACLMTGEITTQNRAYAGGKIVLSPRGAE
LLLEDMMEALSKKK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=247513 COP00_RS11905 WP_048354936.1 2210963..2211247(-) (abrB) [Bacillus glycinifermentans strain KBN06P03352]
GTGAAAAATACCGGAATCGTAAGGAGAATCGACGAGCTTGGAAGGGTGGTCCTCCCGGTTGAAATGCGCAAGGTGCTGAA
TATTGAGGAAAAGGACCCGCTTGAAATATACAGCGACGGAGACAGCATCATTCTCACGAAGTACGCTGCCAACATGGCAT
GTCTGATGACAGGAGAAATCACGACGCAGAACAGAGCGTACGCCGGCGGCAAAATCGTGCTCAGCCCGCGTGGTGCAGAG
CTGCTTTTGGAAGACATGATGGAGGCGCTGTCGAAAAAGAAATAA

Domains

Predicted by InterProScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)

AbrB C-terminal domain (AbrB_C)

(53-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

100

0.543

Multiple sequence alignment