Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   COP00_RS08495 Genome accession   NZ_CP023481
Coordinates   1573097..1573837 (-) Length   246 a.a.
NCBI ID   WP_048406503.1    Uniprot ID   A0A0J6HJI5
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1568097..1578837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS08470 (COP00_08470) mreC 1568402..1569295 (-) 894 WP_048353517.1 rod shape-determining protein MreC -
  COP00_RS08475 (COP00_08475) - 1569327..1570337 (-) 1011 WP_048353516.1 rod shape-determining protein -
  COP00_RS08480 (COP00_08480) radC 1570424..1571116 (-) 693 WP_198403637.1 RadC family protein -
  COP00_RS08485 (COP00_08485) - 1571154..1571726 (-) 573 WP_048355988.1 Maf family protein -
  COP00_RS08490 (COP00_08490) - 1571880..1572902 (-) 1023 WP_048356004.1 SPOR domain-containing protein -
  COP00_RS08495 (COP00_08495) comC 1573097..1573837 (-) 741 WP_048406503.1 prepilin peptidase Machinery gene
  COP00_RS08500 (COP00_08500) - 1573986..1575284 (-) 1299 WP_048355987.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  COP00_RS08505 (COP00_08505) - 1575360..1578001 (-) 2642 Protein_1713 valine--tRNA ligase -
  COP00_RS25450 (COP00_08510) - 1578463..1578654 (+) 192 WP_057957548.1 hypothetical protein -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 26224.84 Da        Isoelectric Point: 8.7960

>NTDB_id=247503 COP00_RS08495 WP_048406503.1 1573097..1573837(-) (comC) [Bacillus glycinifermentans strain KBN06P03352]
MYFVITGLVLGSFFNAAGRRIPQKTSLIAPRSACPVCRRPLTFLELIPVLSYILQRGKCRGCKCSISIVYPAVELAAALL
FPFAWLQVGGEGELVMALLLISLLLVAFVSDVTYMVIPDAVLCFFLPVFVAGRLLIPLDPWHSSITGAACGCLLPLFTAA
VTKGGIGGGDVKLFAVLGVVLGAKLIVLVFFLSAACGTVIGLTAVACGKLKRRDPFPFAPAILIGTLTGYFYGEPLIDLY
VRMMMA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=247503 COP00_RS08495 WP_048406503.1 1573097..1573837(-) (comC) [Bacillus glycinifermentans strain KBN06P03352]
ATGTACTTTGTCATAACCGGTTTGGTGCTAGGCTCTTTTTTTAATGCGGCCGGCCGCCGCATCCCTCAAAAAACCTCTTT
GATCGCTCCGCGCTCCGCCTGCCCCGTCTGCCGCCGCCCATTGACTTTTCTTGAGCTGATCCCGGTGTTGTCCTACATCT
TGCAGAGAGGAAAGTGCAGAGGATGCAAATGCTCCATTTCGATCGTCTATCCGGCCGTTGAGCTAGCGGCAGCTTTACTG
TTTCCCTTTGCATGGCTGCAGGTGGGCGGAGAAGGAGAGCTTGTCATGGCGCTTTTGCTCATTTCTTTGCTGCTGGTCGC
TTTTGTCTCAGATGTGACGTATATGGTCATACCCGATGCCGTACTTTGTTTTTTTCTGCCTGTTTTCGTCGCCGGGCGCT
TATTGATTCCGCTTGATCCCTGGCATTCGAGCATAACGGGGGCGGCTTGCGGATGCCTGTTGCCGCTCTTTACGGCTGCT
GTGACGAAAGGGGGCATCGGCGGGGGAGATGTGAAGCTGTTTGCCGTCCTTGGCGTCGTCCTCGGAGCCAAGCTGATCGT
GCTCGTGTTTTTCCTGTCCGCCGCCTGCGGAACGGTGATCGGGCTTACCGCTGTGGCTTGCGGAAAGCTCAAGCGAAGGG
ATCCCTTTCCGTTTGCGCCCGCCATTTTGATCGGAACGCTGACAGGCTATTTTTACGGCGAGCCGCTGATCGATTTGTAT
GTCCGAATGATGATGGCATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(5-86)

Type IV leader peptidase family (Peptidase_A24)

(98-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6HJI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

49.793

97.967

0.488

Multiple sequence alignment