Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   COP00_RS07210 Genome accession   NZ_CP023481
Coordinates   1335152..1335922 (-) Length   256 a.a.
NCBI ID   WP_048355486.1    Uniprot ID   A0A0J6EAP9
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1330152..1340922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS07190 (COP00_07190) - 1330216..1331028 (-) 813 WP_057957452.1 pyruvate, water dikinase regulatory protein -
  COP00_RS07195 (COP00_07195) - 1331054..1331692 (-) 639 WP_048355501.1 helix-turn-helix transcriptional regulator -
  COP00_RS07200 (COP00_07200) glyS 1331877..1333916 (-) 2040 WP_048355487.1 glycine--tRNA ligase subunit beta -
  COP00_RS07205 (COP00_07205) glyQ 1333909..1334796 (-) 888 WP_006637598.1 glycine--tRNA ligase subunit alpha -
  COP00_RS07210 (COP00_07210) recO 1335152..1335922 (-) 771 WP_048355486.1 DNA repair protein RecO Machinery gene
  COP00_RS07215 (COP00_07215) - 1335963..1336106 (-) 144 WP_065894752.1 YqzL family protein -
  COP00_RS07220 (COP00_07220) era 1336268..1337173 (-) 906 WP_048355485.1 GTPase Era -
  COP00_RS07225 (COP00_07225) - 1337154..1337563 (-) 410 Protein_1454 cytidine deaminase -
  COP00_RS07230 (COP00_07230) - 1337701..1338081 (-) 381 WP_048355484.1 diacylglycerol kinase family protein -
  COP00_RS07235 (COP00_07235) ybeY 1338059..1338535 (-) 477 WP_048355483.1 rRNA maturation RNase YbeY -
  COP00_RS07240 (COP00_07240) - 1338535..1340586 (-) 2052 WP_232517720.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29476.25 Da        Isoelectric Point: 9.0608

>NTDB_id=247496 COP00_RS07210 WP_048355486.1 1335152..1335922(-) (recO) [Bacillus glycinifermentans strain KBN06P03352]
MLTKCEGIVLRTNDYGETNKILTIMTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMLESMRN
IREDLFLTAHAAYIAELMDKGTDEKKSNPFLFELLLQSMRRLNEGTDPDIITNLIEVKMLGVMGLYPELDECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRIPLSPASARLLRLLFYFDLSRLGNVSVKRETKEELKRVIQLYYDEYSGIFLKSRRFM
EQMDNMKKMLGNENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=247496 COP00_RS07210 WP_048355486.1 1335152..1335922(-) (recO) [Bacillus glycinifermentans strain KBN06P03352]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACCAACGATTACGGTGAAACCAATAAAATTTTGACAATCATGACAAG
GGAACACGGGAAAATCGGCGTGCTGGCCAGGGGGGCTAAAAAGCCGAACAGCCGCTTGTCCGCCATTTCCCAGCCCTTTC
TTTATGCTTCGTTTTTGTTTCGGAAATCATCCGGGCTCGGTACGCTTGAGCAGGGCGAGATGCTCGAAAGCATGCGGAAT
ATCCGGGAGGACCTTTTCTTAACGGCGCATGCCGCTTATATCGCCGAATTGATGGACAAAGGAACGGATGAAAAGAAATC
GAACCCGTTTTTATTCGAACTGCTTCTTCAGTCGATGAGGAGGCTGAATGAAGGTACGGATCCGGACATCATCACCAACC
TGATCGAAGTCAAAATGCTCGGCGTGATGGGCCTTTATCCGGAGCTTGATGAATGTGTCCACTGCAAAAGCAAAGACGGC
ACATTCCATTTCTCAATCCGTGACAACGGCTTTATCTGCCACCGATGTTTCGCAAAAGACCCTTACAGGATCCCGCTGTC
ACCCGCTTCCGCCAGGCTCTTGAGGCTGCTTTTTTATTTTGATTTGTCAAGGCTCGGGAATGTATCGGTCAAACGGGAAA
CGAAGGAAGAGCTGAAGAGGGTCATTCAGCTTTACTATGACGAGTATTCGGGAATTTTTCTCAAATCGCGACGCTTTATG
GAGCAGATGGACAATATGAAAAAAATGCTCGGCAACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6EAP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

76.562

100

0.766

Multiple sequence alignment