Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   COP00_RS03420 Genome accession   NZ_CP023481
Coordinates   633746..634264 (+) Length   172 a.a.
NCBI ID   WP_096891823.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 628746..639264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS25315 - 629916..630380 (+) 465 WP_232517678.1 hypothetical protein -
  COP00_RS25320 - 630393..631046 (+) 654 WP_232517679.1 tetratricopeptide repeat protein -
  COP00_RS03410 (COP00_03410) - 631762..632250 (+) 489 WP_048355605.1 cation:proton antiporter regulatory subunit -
  COP00_RS03415 (COP00_03415) - 632267..633490 (+) 1224 WP_048355604.1 cation:proton antiporter -
  COP00_RS03420 (COP00_03420) rok 633746..634264 (+) 519 WP_096891823.1 transcriptional repressor Rok Regulator
  COP00_RS03425 (COP00_03425) - 634586..634864 (+) 279 WP_411801401.1 DNA-binding protein -
  COP00_RS03430 (COP00_03430) - 634999..635382 (+) 384 WP_048355601.1 UPF0715 family protein -
  COP00_RS03440 (COP00_03440) - 636173..636607 (+) 435 WP_048405961.1 dUTP diphosphatase -
  COP00_RS03445 (COP00_03445) - 636662..637244 (+) 583 Protein_702 class I SAM-dependent methyltransferase -
  COP00_RS03450 (COP00_03450) - 637418..637936 (+) 519 WP_048355610.1 AAA family ATPase -
  COP00_RS03455 (COP00_03455) - 637992..638345 (+) 354 WP_231592090.1 DUF3221 domain-containing protein -
  COP00_RS03465 (COP00_03465) - 639065..639163 (-) 99 WP_082142405.1 YjcZ family sporulation protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19900.78 Da        Isoelectric Point: 10.1682

>NTDB_id=247487 COP00_RS03420 WP_096891823.1 633746..634264(+) (rok) [Bacillus glycinifermentans strain KBN06P03352]
MFNEREALRLRLEQLNDAEISVMRELREERNEIYSKLRELDNNEPNMIHKKPLLELANANANANANAQPFEKNKPEKSAP
IASSTIPRRKPKPGTKAYKHREAALKILKHHKGEIKSRELQKEIEKETGMSIPNMTTFMQGLIKFHPEVEKTYRGQYVLR
KEKGNAVDESPS

Nucleotide


Download         Length: 519 bp        

>NTDB_id=247487 COP00_RS03420 WP_096891823.1 633746..634264(+) (rok) [Bacillus glycinifermentans strain KBN06P03352]
GTGTTCAATGAAAGAGAGGCGCTCCGTTTAAGACTTGAGCAGCTCAACGATGCTGAGATCAGTGTCATGCGCGAACTCCG
GGAGGAACGGAATGAAATTTATTCTAAGCTGCGTGAACTAGACAATAACGAGCCTAACATGATCCACAAAAAACCGCTTT
TAGAGTTAGCCAATGCAAATGCAAATGCAAATGCAAATGCACAACCTTTTGAAAAAAATAAACCGGAGAAATCAGCACCA
ATTGCTTCATCTACAATCCCCAGAAGAAAACCCAAACCTGGAACGAAAGCTTACAAACATCGTGAGGCAGCTTTAAAGAT
TTTAAAGCACCACAAAGGTGAAATAAAAAGCCGTGAGCTTCAAAAAGAAATTGAAAAAGAAACGGGGATGTCAATTCCTA
ATATGACGACATTTATGCAGGGATTAATAAAATTTCACCCTGAAGTCGAAAAGACATACCGGGGTCAATATGTTCTCAGA
AAAGAAAAAGGAAATGCCGTTGACGAAAGCCCTTCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

51.613

100

0.558

Multiple sequence alignment