Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   COP00_RS00270 Genome accession   NZ_CP023481
Coordinates   54598..55059 (-) Length   153 a.a.
NCBI ID   WP_057957609.1    Uniprot ID   A0A0T6BPT7
Organism   Bacillus glycinifermentans strain KBN06P03352     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 49598..60059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COP00_RS00250 (COP00_00250) - 49993..51173 (-) 1181 Protein_55 aminotransferase A -
  COP00_RS24900 - 51334..51489 (-) 156 WP_172796347.1 hypothetical protein -
  COP00_RS00255 (COP00_00255) - 51652..52164 (+) 513 WP_232517662.1 RDD family protein -
  COP00_RS00260 (COP00_00260) - 52251..53567 (+) 1317 WP_048353039.1 MFS transporter -
  COP00_RS00265 (COP00_00265) - 53642..54562 (+) 921 WP_096891712.1 chemotaxis protein -
  COP00_RS00270 (COP00_00270) kre 54598..55059 (-) 462 WP_057957609.1 YkyB family protein Regulator
  COP00_RS00275 (COP00_00275) - 55199..56500 (-) 1302 WP_057957608.1 MFS transporter -
  COP00_RS00280 (COP00_00280) - 56564..56944 (-) 381 WP_231947486.1 L,D-transpeptidase -
  COP00_RS00285 (COP00_00285) - 57173..58030 (-) 858 WP_048353040.1 metallophosphoesterase -
  COP00_RS00290 (COP00_00290) fadH 58177..58941 (+) 765 WP_048353041.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17615.49 Da        Isoelectric Point: 10.6215

>NTDB_id=247481 COP00_RS00270 WP_057957609.1 54598..55059(-) (kre) [Bacillus glycinifermentans strain KBN06P03352]
MDDHNHTKVLKPTVENLSKAIYTVNRHAKTATDPKYLYLLKKKALQKLINEGKGKKVGLHFSKNPKFSQQQSDVLISLGD
YFFHMPPTKEDFDNLPHLGTLNHSYRNPKAHMSLNIAKQLLQKYTGLKEKPLITNRKRPSAKPVFKKLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=247481 COP00_RS00270 WP_057957609.1 54598..55059(-) (kre) [Bacillus glycinifermentans strain KBN06P03352]
ATGGACGACCATAATCATACTAAAGTATTAAAACCAACAGTTGAAAACCTTTCAAAAGCGATTTACACGGTCAATCGCCA
CGCAAAAACCGCGACCGATCCAAAATACCTGTATCTCCTGAAAAAGAAAGCTCTGCAAAAGCTCATCAATGAAGGAAAAG
GAAAAAAGGTAGGACTTCACTTTTCAAAAAACCCAAAGTTCAGCCAGCAGCAGTCAGATGTGCTTATTTCTCTCGGAGAC
TACTTTTTTCACATGCCTCCAACTAAAGAAGACTTCGATAACCTTCCGCACTTAGGTACACTAAATCATTCTTATCGGAA
CCCTAAAGCTCATATGTCATTGAACATCGCAAAGCAGCTTCTGCAGAAATACACGGGATTGAAGGAAAAGCCGCTTATCA
CGAACAGGAAGCGCCCTTCGGCAAAGCCTGTATTCAAGAAGCTTGGCGAAAGCTATTTTTGA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6BPT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

79.87

100

0.804

Multiple sequence alignment