Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KPC142_RS16235 Genome accession   NZ_CP023478
Coordinates   3241256..3241852 (-) Length   198 a.a.
NCBI ID   WP_106939271.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain KPC142     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3236256..3246852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPC142_RS16220 (KPC142_05041) helD 3236467..3238521 (-) 2055 WP_057214205.1 DNA helicase IV -
  KPC142_RS16225 (KPC142_00068) - 3238646..3239092 (+) 447 WP_004201437.1 YccF domain-containing protein -
  KPC142_RS16230 (KPC142_00069) yccS 3239110..3241245 (+) 2136 WP_106939270.1 YccS family putative transporter -
  KPC142_RS16235 (KPC142_00070) sxy/tfoX 3241256..3241852 (-) 597 WP_106939271.1 TfoX/Sxy family DNA transformation protein Regulator
  KPC142_RS16245 (KPC142_00071) sulA 3242201..3242710 (+) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  KPC142_RS16250 (KPC142_00072) ompA 3243063..3244133 (+) 1071 WP_004201430.1 porin OmpA -
  KPC142_RS16255 (KPC142_00073) matP 3244323..3244775 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  KPC142_RS16260 (KPC142_00074) - 3244961..3246718 (+) 1758 WP_106939272.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22547.25 Da        Isoelectric Point: 9.9557

>NTDB_id=247471 KPC142_RS16235 WP_106939271.1 3241256..3241852(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain KPC142]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFHLSLMSWQSAQREKCRRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=247471 KPC142_RS16235 WP_106939271.1 3241256..3241852(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain KPC142]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCATTGTGGCGCGATGAGAAACAGCTTTTCCACTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.256

98.485

0.495

Multiple sequence alignment