Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AOY68_RS17405 Genome accession   NZ_CP028759
Coordinates   3655283..3655798 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain A15     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3650283..3660798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY68_RS17380 (AOY68_18515) ygaZ 3650682..3651419 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  AOY68_RS17385 (AOY68_18520) ygaH 3651409..3651744 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AOY68_RS17390 (AOY68_18525) emrR 3651835..3652365 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AOY68_RS17395 (AOY68_18530) emrA 3652492..3653664 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AOY68_RS17400 (AOY68_18535) emrB 3653681..3655219 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AOY68_RS17405 (AOY68_18540) luxS 3655283..3655798 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  AOY68_RS17410 (AOY68_18545) gshA 3655948..3657504 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AOY68_RS17415 (AOY68_18550) yqaA 3657577..3658005 (-) 429 WP_001287457.1 YqaA family protein -
  AOY68_RS17420 (AOY68_18555) yqaB 3658002..3658568 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AOY68_RS17450 (AOY68_18585) csrA 3660161..3660346 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=247449 AOY68_RS17405 WP_001130207.1 3655283..3655798(-) (luxS) [Escherichia coli strain A15]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=247449 AOY68_RS17405 WP_001130207.1 3655283..3655798(-) (luxS) [Escherichia coli strain A15]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment