Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   CO204_RS09130 Genome accession   NZ_CP023477
Coordinates   1806548..1807450 (-) Length   300 a.a.
NCBI ID   WP_002263524.1    Uniprot ID   A0AAX1K0S8
Organism   Streptococcus mutans strain LAR01     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1801548..1812450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CO204_RS09110 (CO204_09060) - 1801635..1802087 (-) 453 WP_002266696.1 PTS sugar transporter subunit IIA -
  CO204_RS09115 (CO204_09065) - 1802104..1802526 (-) 423 WP_002266695.1 PTS sugar transporter subunit IIA -
  CO204_RS10895 - 1802516..1802746 (-) 231 WP_238560628.1 hypothetical protein -
  CO204_RS09120 (CO204_09070) - 1802791..1803990 (-) 1200 WP_254047651.1 PRD domain-containing protein -
  CO204_RS09125 (CO204_09075) - 1804527..1806191 (-) 1665 WP_002302914.1 transcription antiterminator -
  CO204_RS09130 (CO204_09080) comB/nlmE 1806548..1807450 (-) 903 WP_002263524.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  CO204_RS09135 (CO204_09085) comA/nlmT 1807464..1809746 (-) 2283 WP_019313053.1 peptide cleavage/export ABC transporter Regulator
  CO204_RS09140 (CO204_09095) - 1810175..1810351 (-) 177 WP_002309972.1 hypothetical protein -
  CO204_RS09145 (CO204_09100) - 1810401..1810808 (-) 408 WP_002280431.1 hypothetical protein -
  CO204_RS09150 (CO204_09105) - 1810833..1811051 (-) 219 Protein_1732 Blp family class II bacteriocin -
  CO204_RS09160 (CO204_09115) - 1812131..1812409 (-) 279 WP_002264456.1 hypothetical protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34116.49 Da        Isoelectric Point: 10.4213

>NTDB_id=247444 CO204_RS09130 WP_002263524.1 1806548..1807450(-) (comB/nlmE) [Streptococcus mutans strain LAR01]
MDPKFLQSAEFYRRRYHNFATLLIVPLVCLIIFLVIFLCFAKKEITVISTGEVAPTKVVDVIQSYSDSSIIKNNLDNNAA
VEKGDVLIEYSENASPNRQTEQKNIIKERQKREEKEKKKHQKSKKKKKSKSKKASKDKKKKSKDKESSSDDENETKKVSI
FASEDGIIHTNPKYDGANIIPKQTEIAQIYPDIQKTRKVLITYYASSDDVVSMKKGQTARLSLEKKGNDKVVIEGKINNV
ASSATTTKKGNLFKVTAKVKVSKKNSKLIKYGMTGKTVTVIDKKTYFDYFKDKLLHKMDN

Nucleotide


Download         Length: 903 bp        

>NTDB_id=247444 CO204_RS09130 WP_002263524.1 1806548..1807450(-) (comB/nlmE) [Streptococcus mutans strain LAR01]
ATGGATCCTAAATTTTTACAAAGTGCAGAATTTTATAGGAGACGCTATCATAATTTTGCGACATTATTAATTGTTCCGTT
GGTCTGCTTGATTATCTTCTTGGTCATATTCCTTTGTTTTGCTAAAAAAGAAATTACAGTGATTTCTACTGGTGAAGTTG
CACCAACAAAGGTTGTAGATGTTATCCAATCTTACAGTGACAGTTCAATCATTAAAAATAATTTAGATAATAATGCAGCT
GTTGAGAAGGGAGACGTTTTAATTGAATATTCAGAAAATGCCAGTCCAAACCGTCAGACTGAACAAAAGAATATTATAAA
AGAAAGACAAAAACGAGAAGAGAAGGAAAAGAAAAAACACCAAAAGAGCAAGAAAAAGAAGAAGTCTAAGAGCAAGAAAG
CTTCCAAAGATAAGAAAAAGAAATCGAAAGACAAGGAAAGCAGCTCTGACGATGAAAATGAGACAAAAAAGGTTTCGATT
TTTGCTTCAGAAGATGGTATTATTCATACCAATCCCAAATATGATGGTGCCAATATTATTCCGAAGCAAACCGAGATTGC
TCAAATCTATCCTGATATTCAAAAAACAAGAAAAGTGTTAATCACCTATTATGCTTCTTCTGATGATGTTGTTTCTATGA
AAAAGGGGCAAACCGCTCGTCTTTCCTTGGAAAAAAAGGGAAATGACAAGGTTGTTATTGAAGGAAAAATTAACAATGTC
GCTTCATCAGCAACTACTACTAAAAAAGGAAATCTCTTTAAGGTTACTGCTAAAGTAAAGGTTTCTAAGAAAAATAGCAA
ACTCATCAAGTATGGTATGACAGGCAAGACAGTCACTGTCATTGATAAAAAGACTTATTTTGATTATTTCAAAGATAAAT
TACTGCATAAAATGGATAATTAG

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(160-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

100

100

1

Multiple sequence alignment